BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0004.p         (79 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A1WES9.1 A1WES9_VEREI Efflux transporter, RND family, MFP subunit      84   5e-15
D8IWG1.1 D8IWG1_HERSS Membrane-fusion protein                          70   7e-11
D3NVH2.1 D3NVH2_AZOS1 Multidrug efflux transporter                     66   2e-09

>A1WES9.1 A1WES9_VEREI Efflux transporter, RND family, MFP subunit
          Length = 360

 Score = 84.3 bits (207), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 47/57 (82%)

Query: 1   VYIVKADETAAIQPVKVTRIQDGVAVLSQGLEVNQRVVLDGQYKLKPGSHVIENKAA 57
           VYIVKAD+T AIQP++V RIQDG+AV+ +GL   QRVVLDGQYKLKPGS + E  AA
Sbjct: 299 VYIVKADDTVAIQPIEVVRIQDGMAVIGKGLASAQRVVLDGQYKLKPGSRITEASAA 355


>D8IWG1.1 D8IWG1_HERSS Membrane-fusion protein
          Length = 403

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 45/57 (78%), Gaps = 2/57 (3%)

Query: 1   VYIVKADETAAIQPVKVTRIQDGVAVLSQG--LEVNQRVVLDGQYKLKPGSHVIENK 55
           VY +  ++ A +QPVKV RIQDG+AVL+ G  ++  QRVV+DGQYKLKPGS ++E+K
Sbjct: 328 VYAIDQEDQARMQPVKVERIQDGIAVLAAGNAVQAGQRVVIDGQYKLKPGSRIVESK 384


>D3NVH2.1 D3NVH2_AZOS1 Multidrug efflux transporter
          Length = 431

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query: 1   VYIVKADETAAIQPVKVTRIQDGVAVLSQGLEVNQRVVLDGQYKLKPGSHVIE 53
           VY+VKADET  ++PV V R+  G+AV+S GLE  +RVV+DGQ +L PG+ + E
Sbjct: 331 VYVVKADETVEVRPVTVERVHGGLAVISSGLENGERVVVDGQSRLFPGAKITE 383