BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0003.p         (109 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWG1.1 D8IWG1_HERSS Membrane-fusion protein                         111   4e-23
A1WES9.1 A1WES9_VEREI Efflux transporter, RND family, MFP subunit     110   6e-23
E6UX89.1 E6UX89_VARPD Efflux transporter, RND family, MFP subunit     103   1e-20
B2IJ48.1 B2IJ48_BEII9 Efflux transporter, RND family, MFP subunit      89   2e-16
A5EHI6.1 A5EHI6_BRASB Putative component of multidrug efflux pum...    78   4e-13

>D8IWG1.1 D8IWG1_HERSS Membrane-fusion protein
          Length = 403

 Score =  111 bits (277), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/107 (58%), Positives = 75/107 (70%), Gaps = 4/107 (3%)

Query: 1   MTTSLTPKRST--LLISVAVLVALGGGAWSLFHRADAVAASKEQAQQAPSISVTTVQVQE 58
           M+TS TP R +   +   A L+  G G W+   RA A  A + QA+  P +SVT   VQE
Sbjct: 1   MSTSPTPPRRSRLAIALAAALLMAGIGGWTHLQRASA--ADQPQAKAPPPVSVTLASVQE 58

Query: 59  RDIPLYLSGVGTVTANASVVVKVRIDGQLDKVGFTEGQDVKAGQLLA 105
           RD+P YL+GVGTVTANASVVVK RIDGQL+KVGF EG+DVK GQLLA
Sbjct: 59  RDLPQYLAGVGTVTANASVVVKTRIDGQLEKVGFQEGEDVKKGQLLA 105


>A1WES9.1 A1WES9_VEREI Efflux transporter, RND family, MFP subunit
          Length = 360

 Score =  110 bits (275), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 56/76 (73%), Positives = 64/76 (84%), Gaps = 1/76 (1%)

Query: 30  FHRADAVAASKEQAQQAPSISVTTVQVQERDIPLYLSGVGTVTANASVVVKVRIDGQLDK 89
             R+DAVA + + A  AP+ISVTTV+ QERDIPLYL+GVGT TANASV VK RIDGQLDK
Sbjct: 1   MRRSDAVAQAPQVAH-APAISVTTVRAQERDIPLYLAGVGTATANASVTVKARIDGQLDK 59

Query: 90  VGFTEGQDVKAGQLLA 105
           VGF+EGQDV+ GQLLA
Sbjct: 60  VGFSEGQDVREGQLLA 75


>E6UX89.1 E6UX89_VARPD Efflux transporter, RND family, MFP subunit
          Length = 408

 Score =  103 bits (256), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 4/106 (3%)

Query: 2   TTSLTP--KRSTLLISVAVLVALGGGAWSLFHRADAVAASKEQAQQAPSISVTTVQVQER 59
           TT+  P  +RST + +  +++ LGG AW+L H  +    +K +A + P + VTT +V  +
Sbjct: 3   TTTSAPLQRRSTWVAAATLVIVLGGSAWALNH--NKAFGAKPEAPKTPPVQVTTARVTPQ 60

Query: 60  DIPLYLSGVGTVTANASVVVKVRIDGQLDKVGFTEGQDVKAGQLLA 105
           ++ +Y SG+GTV + A+V VK RIDGQLDKVGFTEGQDVKAGQLLA
Sbjct: 61  NVQVYRSGIGTVASMATVTVKARIDGQLDKVGFTEGQDVKAGQLLA 106


>B2IJ48.1 B2IJ48_BEII9 Efflux transporter, RND family, MFP subunit
          Length = 389

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%), Gaps = 9/107 (8%)

Query: 4   SLTPKRSTLLIS-VAVLVALGGGAWSLFH----RADAVAASKEQAQQAPSISVTTVQVQE 58
           S  P+RS LL S VA++VA GG  +SL+H     +  +AA  +     P++ V T   ++
Sbjct: 6   STRPRRSYLLPSFVALIVAAGG--YSLWHMRASESSQIAAKGDSL--TPAVPVQTTLAEQ 61

Query: 59  RDIPLYLSGVGTVTANASVVVKVRIDGQLDKVGFTEGQDVKAGQLLA 105
           RD+P+YL+G+G V A  +V +K R+DGQL KV FTEGQDVKAG LLA
Sbjct: 62  RDVPVYLTGIGHVQAFNTVTIKTRVDGQLQKVAFTEGQDVKAGDLLA 108


>A5EHI6.1 A5EHI6_BRASB Putative component of multidrug efflux pump, mdtA-like
           protein
          Length = 389

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 66/101 (65%), Gaps = 4/101 (3%)

Query: 8   KRSTLLISVAVLVALGGGAWSLFHR-ADAVAASKEQAQQA---PSISVTTVQVQERDIPL 63
           K S  ++ + ++ A+GG  +  + R  DA +A K  AQ++   P++ V+T  V+  D P+
Sbjct: 2   KTSRTIVWILLVAAVGGAGYYGWQRYQDAESAKKTSAQKSARPPAVRVSTAPVERIDFPV 61

Query: 64  YLSGVGTVTANASVVVKVRIDGQLDKVGFTEGQDVKAGQLL 104
           +L+G+GTV    +V V+ R+DGQ+DK+GFTEGQ VK G LL
Sbjct: 62  FLTGLGTVQGFNTVQVRTRVDGQIDKIGFTEGQLVKEGDLL 102