BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0316.p (431 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRG0.1 D8IRG0_HERSS NADH dehydrogenase I (Chain F) oxidoreduct... 833 0.0 C6BJP4.1 C6BJP4_RALP1 NADH-quinone oxidoreductase, F subunit EC=... 772 0.0 E2T121.1 E2T121_9RALS NADH oxidoreductase (Quinone), F subunit 772 0.0 B2U7Q6.1 B2U7Q6_RALPJ NADH-quinone oxidoreductase, F subunit EC=... 771 0.0 B5SIK6.1 B5SIK6_RALSO Nadh dehydrogenaseI(Chain f) protein EC=1.... 770 0.0 >D8IRG0.1 D8IRG0_HERSS NADH dehydrogenase I (Chain F) oxidoreductase protein EC=1.6.5.3 Length = 431 Score = 833 bits (2153), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/431 (94%), Positives = 423/431 (98%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MTCLHDRHIKPLILADL+G+NWHL DYVKRGGYESLKRIL E ITPEQVIA+LK+SGLRG Sbjct: 1 MTCLHDRHIKPLILADLNGENWHLEDYVKRGGYESLKRILNEKITPEQVIADLKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGMIIGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMIIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEIF AY RFEEALEEARAAGFLGDNILGTGF+FQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIFSAYERFEEALEEARAAGFLGDNILGTGFSFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFK+G QAYA++GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKVGPQAYAEMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKK+KAVIPGGSSAPVIRGD Sbjct: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKIKAVIPGGSSAPVIRGD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 VMM+TTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFYYEESCGQCTPCREGTG Sbjct: 301 VMMDTTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 WMYRMVERIENGHGK+EDLDVLNSVADNIQGRTICALGDAAAMPVRAF+KNFREEFEYHI Sbjct: 361 WMYRMVERIENGHGKMEDLDVLNSVADNIQGRTICALGDAAAMPVRAFVKNFREEFEYHI 420 Query: 421 EHKHCSVPAYI 431 EHKHC VPAYI Sbjct: 421 EHKHCLVPAYI 431 >C6BJP4.1 C6BJP4_RALP1 NADH-quinone oxidoreductase, F subunit EC=1.6.99.5 Length = 431 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/431 (84%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE ITPEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFYYEESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP Y+ Sbjct: 421 EHKQCMVPTYL 431 >E2T121.1 E2T121_9RALS NADH oxidoreductase (Quinone), F subunit Length = 431 Score = 772 bits (1994), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/431 (84%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE ITPEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFYYEESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYYEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP Y+ Sbjct: 421 EHKQCMVPTYL 431 >B2U7Q6.1 B2U7Q6_RALPJ NADH-quinone oxidoreductase, F subunit EC=1.6.99.5 Length = 431 Score = 771 bits (1992), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/431 (84%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE ITPEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKITPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP YI Sbjct: 421 EHKQCMVPTYI 431 >B5SIK6.1 B5SIK6_RALSO Nadh dehydrogenaseI(Chain f) protein EC=1.6.5.3 Length = 431 Score = 770 bits (1989), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/431 (83%), Positives = 398/431 (92%) Query: 1 MTCLHDRHIKPLILADLDGQNWHLADYVKRGGYESLKRILTENITPEQVIAELKSSGLRG 60 MT LHDRHI+PLILA L+G NWHL DYVKRGGY+ LKRILTE I+PEQVIA++K+SGLRG Sbjct: 1 MTSLHDRHIQPLILAGLNGDNWHLEDYVKRGGYQQLKRILTEKISPEQVIADVKASGLRG 60 Query: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNSDEGEPGTFKDRDIIRYNPHSLIEGMIIGGYA 120 RGGAGFPTGLKWSFMPRQFPGQKYLVCN+DEGEPGTFKDRDIIRYNPH+LIEGM IGGYA Sbjct: 61 RGGAGFPTGLKWSFMPRQFPGQKYLVCNTDEGEPGTFKDRDIIRYNPHALIEGMAIGGYA 120 Query: 121 MGITVGYNYIHGEIFDAYLRFEEALEEARAAGFLGDNILGTGFNFQLHGHHGYGAYICGE 180 MGITVGYNYIHGEI++ Y FE+ALEEARAAGFLGDNILG+GFNFQLH HHGYGAYICGE Sbjct: 121 MGITVGYNYIHGEIWNEYKIFEQALEEARAAGFLGDNILGSGFNFQLHAHHGYGAYICGE 180 Query: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFIFKIGAQAYADIGKP 240 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPF+ IG Y +GKP Sbjct: 181 ETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINNTETFAAVPFLLAIGPDNYLKMGKP 240 Query: 241 NNGGTKIFSISGDVERPGNYEIPLGTPFSTLLELAGGMRGGKKLKAVIPGGSSAPVIRGD 300 NNGG+KIFS+SGDVERPGNYEIPLGTPFS LLELAGGMRGGKKLKAVIPGGSSAPV+ D Sbjct: 241 NNGGSKIFSVSGDVERPGNYEIPLGTPFSKLLELAGGMRGGKKLKAVIPGGSSAPVVPAD 300 Query: 301 VMMETTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLAYFYYEESCGQCTPCREGTG 360 +MM + MDYD+IAKAGSMLGSGAVIVMDETRCMVKSLLRL+YFY+EESCGQCTPCREGTG Sbjct: 301 LMMASDMDYDSIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTG 360 Query: 361 WMYRMVERIENGHGKLEDLDVLNSVADNIQGRTICALGDAAAMPVRAFIKNFREEFEYHI 420 W+YR+V+RIE+G G+ EDLD+LN+VA+NI GRTICALGDAAAMPVR +K++ +EF YH+ Sbjct: 361 WLYRVVDRIEHGKGRQEDLDLLNNVAENIMGRTICALGDAAAMPVRGMLKHYWDEFAYHV 420 Query: 421 EHKHCSVPAYI 431 EHK C VP YI Sbjct: 421 EHKQCMVPTYI 431