BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0269.p (346 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1W1Q1.1 F1W1Q1_9BURK Twitching motility protein PilT 485 e-135 A6SUT3.1 A6SUT3_JANMA PilT twitching motility protein 483 e-134 A4G1X9.1 A4G1X9_HERAR Pilus retraction protein PilT 483 e-134 C6BD67.1 C6BD67_RALP1 Twitching motility protein 478 e-133 E2SZW4.1 E2SZW4_9RALS 4-diphosphocytidyl-2C-methyl-D-erythritol ... 478 e-133 >F1W1Q1.1 F1W1Q1_9BURK Twitching motility protein PilT Length = 347 Score = 485 bits (1249), Expect = e-135, Method: Compositional matrix adjust. Identities = 237/345 (68%), Positives = 280/345 (81%) Query: 1 MDIPDLLAFSVKNQASDLHLSTGLPPMLRLRGDMRRVNLPVLLAQDVDDMLNAIMEPAQA 60 MDI +LLAFSVKN ASDLHLS GLPPM+R+ GD+RR+NLP L +DV M+ IM Q Sbjct: 1 MDISELLAFSVKNNASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHAMIYDIMNDGQR 60 Query: 61 EAYRRDLECDFAIDIAGLARFRINAFQQARGPAAVIRTIPHSIRSLADLDAPPVLVELAL 120 +AY LE DF+ I GLARFR+NAF Q RG AAV+RTIP I SL L+AP + EL+L Sbjct: 61 KAYEEKLEVDFSFAIPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEQLNAPRIFAELSL 120 Query: 121 RRQGLILVTGPTGSGKSTTLAAMIRHINEQRPAHILTIEDPIEFIHAPDKSLISQRAVGA 180 + +GL+LVTGPTGSGKSTTLAAM+ H+NE AHILTIEDPIEF+H K LI+QR VG Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHESKKCLINQREVGP 180 Query: 181 HTHSFANALRSALREDPDVILIGELRDLDSIRLALTAAETGHLVLATLHTSSAAKSIDRI 240 HTHSF+ ALRSALREDPDV+L+GELRDL++IRLAL+AAETGHLV TLHTSSAAK+IDRI Sbjct: 181 HTHSFSAALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDVFPGDEKDMVRSMLSESLSAVVSQILLKTKAGDDRIAAHEIMLGTPAIRNLIREGKVA 300 +DVFPGDEK+MVR+MLSESL AV+SQ LLKTK G R+AAHEIMLGTPAIRNLIRE K+A Sbjct: 241 VDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGAGRVAAHEIMLGTPAIRNLIRESKIA 300 Query: 301 QMVSVMQTSGGAGMQTLDHCLGDLLRRDLITTETARAASRTPGQF 345 QM S +QT GMQTLDH L DL+RR++I+ + AR+A++TP F Sbjct: 301 QMYSAIQTGMNMGMQTLDHNLTDLVRRNVISPQVARSAAKTPENF 345 >A6SUT3.1 A6SUT3_JANMA PilT twitching motility protein Length = 347 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/345 (68%), Positives = 279/345 (80%) Query: 1 MDIPDLLAFSVKNQASDLHLSTGLPPMLRLRGDMRRVNLPVLLAQDVDDMLNAIMEPAQA 60 MDI +LLAFSVKN+ASDLHLS GLPPM+R+ GD+RR+NLP L +DV M+ IM Q Sbjct: 1 MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQR 60 Query: 61 EAYRRDLECDFAIDIAGLARFRINAFQQARGPAAVIRTIPHSIRSLADLDAPPVLVELAL 120 + Y LE DF+ I GLARFR+NAF Q RG AAV+RTIP I SL DL+AP + +LAL Sbjct: 61 KVYEERLEIDFSFAIPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEDLNAPKIFADLAL 120 Query: 121 RRQGLILVTGPTGSGKSTTLAAMIRHINEQRPAHILTIEDPIEFIHAPDKSLISQRAVGA 180 + +GL+LVTGPTGSGKSTTLAAM+ H+NE AHILTIEDPIEF+H K LI+QR VG Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHDSKKCLINQREVGP 180 Query: 181 HTHSFANALRSALREDPDVILIGELRDLDSIRLALTAAETGHLVLATLHTSSAAKSIDRI 240 HTHSF NALRSALREDPDV+L+GELRDL++IRLAL+AAETGHLV TLHTSSAAK+IDRI Sbjct: 181 HTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDVFPGDEKDMVRSMLSESLSAVVSQILLKTKAGDDRIAAHEIMLGTPAIRNLIREGKVA 300 IDVFPGDEK+MVR+MLSESL AV+SQ LLKTK G R+AAHEIMLGTPAIRNLIRE K+A Sbjct: 241 IDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMLGTPAIRNLIREAKIA 300 Query: 301 QMVSVMQTSGGAGMQTLDHCLGDLLRRDLITTETARAASRTPGQF 345 QM S +QT GMQTLD L +L++R++I+ AR+A++TP F Sbjct: 301 QMYSAIQTGSNVGMQTLDANLTELVKRNVISNAAARSAAKTPDNF 345 >A4G1X9.1 A4G1X9_HERAR Pilus retraction protein PilT Length = 347 Score = 483 bits (1243), Expect = e-134, Method: Compositional matrix adjust. Identities = 236/345 (68%), Positives = 278/345 (80%) Query: 1 MDIPDLLAFSVKNQASDLHLSTGLPPMLRLRGDMRRVNLPVLLAQDVDDMLNAIMEPAQA 60 MDI +LLAFSVKN+ASDLHLS GLPPM+R+ GD+RR+NLP L +DV M+ IM Q Sbjct: 1 MDISELLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINLPPLEHKDVHGMIYDIMNDGQR 60 Query: 61 EAYRRDLECDFAIDIAGLARFRINAFQQARGPAAVIRTIPHSIRSLADLDAPPVLVELAL 120 + Y LE DF+ I GLARFR+NAF Q RG AAV+RTIP I SL DL AP + EL+L Sbjct: 61 KVYEERLEIDFSFAIPGLARFRVNAFNQDRGAAAVLRTIPSKILSLEDLHAPKIFAELSL 120 Query: 121 RRQGLILVTGPTGSGKSTTLAAMIRHINEQRPAHILTIEDPIEFIHAPDKSLISQRAVGA 180 + +GL+LVTGPTGSGKSTTLAAM+ H+NE AHILTIEDPIEF+H K LI+QR VG Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHVNENEYAHILTIEDPIEFVHDSKKCLINQREVGP 180 Query: 181 HTHSFANALRSALREDPDVILIGELRDLDSIRLALTAAETGHLVLATLHTSSAAKSIDRI 240 HTHSF NALRSALREDPDV+L+GELRDL++IRLAL+AAETGHLV TLHTSSAAK+IDRI Sbjct: 181 HTHSFENALRSALREDPDVVLVGELRDLETIRLALSAAETGHLVFGTLHTSSAAKTIDRI 240 Query: 241 IDVFPGDEKDMVRSMLSESLSAVVSQILLKTKAGDDRIAAHEIMLGTPAIRNLIREGKVA 300 IDVFPGDEK+MVR+MLSESL AV+SQ LLKTK G R+AAHEIMLGTPAIRNLIRE K+A Sbjct: 241 IDVFPGDEKEMVRAMLSESLQAVISQTLLKTKDGSGRVAAHEIMLGTPAIRNLIRESKIA 300 Query: 301 QMVSVMQTSGGAGMQTLDHCLGDLLRRDLITTETARAASRTPGQF 345 QM S +QT GMQTLD L +L++R++I+ AR+A++TP F Sbjct: 301 QMYSAIQTGSNVGMQTLDSNLTELVKRNVISNAAARSAAKTPDNF 345 >C6BD67.1 C6BD67_RALP1 Twitching motility protein Length = 347 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/346 (66%), Positives = 275/346 (79%) Query: 1 MDIPDLLAFSVKNQASDLHLSTGLPPMLRLRGDMRRVNLPVLLAQDVDDMLNAIMEPAQA 60 MDI LLAFS KN+ASDLHLS GLPPM+R+ GDMRR+N+P L QDV M+ IM Q Sbjct: 1 MDIAQLLAFSAKNKASDLHLSAGLPPMIRIHGDMRRINVPPLTHQDVHSMVYDIMSDGQR 60 Query: 61 EAYRRDLECDFAIDIAGLARFRINAFQQARGPAAVIRTIPHSIRSLADLDAPPVLVELAL 120 + Y +LE DF+ +I GL+RFR+NAF Q RG +AV RTIP + SL DL AP V +LA+ Sbjct: 61 KVYEENLEVDFSFEIPGLSRFRVNAFNQNRGASAVFRTIPSKVLSLDDLKAPAVFADLAM 120 Query: 121 RRQGLILVTGPTGSGKSTTLAAMIRHINEQRPAHILTIEDPIEFIHAPDKSLISQRAVGA 180 + +GL+LVTGPTGSGKSTTLAAM+ H NE HILT+EDPIEF+H KSLI+QR +G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHRNENDMGHILTVEDPIEFVHESKKSLINQRELGP 180 Query: 181 HTHSFANALRSALREDPDVILIGELRDLDSIRLALTAAETGHLVLATLHTSSAAKSIDRI 240 HTHSFANAL+SALREDPDV+L+GELRDL++IRLALTAAETGHLV TLHTSSAAK+IDR+ Sbjct: 181 HTHSFANALKSALREDPDVVLVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRV 240 Query: 241 IDVFPGDEKDMVRSMLSESLSAVVSQILLKTKAGDDRIAAHEIMLGTPAIRNLIREGKVA 300 +DVFP DEK+MVR+MLSESL AV+SQ LLKT+ G RIAAHEIM+ TPAIR+LIRE K++ Sbjct: 241 VDVFPSDEKEMVRTMLSESLEAVISQTLLKTRDGSGRIAAHEIMIATPAIRHLIRENKIS 300 Query: 301 QMVSVMQTSGGAGMQTLDHCLGDLLRRDLITTETARAASRTPGQFA 346 QM S+MQTS G GMQTLD CL +L++R I ARA ++ P FA Sbjct: 301 QMYSMMQTSSGMGMQTLDQCLSELIKRSAINYADARAIAKNPDAFA 346 >E2SZW4.1 E2SZW4_9RALS 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Length = 347 Score = 478 bits (1230), Expect = e-133, Method: Compositional matrix adjust. Identities = 229/346 (66%), Positives = 275/346 (79%) Query: 1 MDIPDLLAFSVKNQASDLHLSTGLPPMLRLRGDMRRVNLPVLLAQDVDDMLNAIMEPAQA 60 MDI LLAFS KN+ASDLHLS GLPPM+R+ GDMRR+N+P L QDV M+ IM Q Sbjct: 1 MDIAQLLAFSAKNKASDLHLSAGLPPMIRIHGDMRRINVPPLTHQDVHSMVYDIMSDGQR 60 Query: 61 EAYRRDLECDFAIDIAGLARFRINAFQQARGPAAVIRTIPHSIRSLADLDAPPVLVELAL 120 + Y +LE DF+ +I GL+RFR+NAF Q RG +AV RTIP + SL DL AP V +LA+ Sbjct: 61 KVYEENLEVDFSFEIPGLSRFRVNAFNQNRGASAVFRTIPSKVLSLDDLKAPAVFADLAM 120 Query: 121 RRQGLILVTGPTGSGKSTTLAAMIRHINEQRPAHILTIEDPIEFIHAPDKSLISQRAVGA 180 + +GL+LVTGPTGSGKSTTLAAM+ H NE HILT+EDPIEF+H KSLI+QR +G Sbjct: 121 KPRGLVLVTGPTGSGKSTTLAAMVNHRNENDMGHILTVEDPIEFVHESKKSLINQRELGP 180 Query: 181 HTHSFANALRSALREDPDVILIGELRDLDSIRLALTAAETGHLVLATLHTSSAAKSIDRI 240 HTHSFANAL+SALREDPDV+L+GELRDL++IRLALTAAETGHLV TLHTSSAAK+IDR+ Sbjct: 181 HTHSFANALKSALREDPDVVLVGELRDLETIRLALTAAETGHLVFGTLHTSSAAKTIDRV 240 Query: 241 IDVFPGDEKDMVRSMLSESLSAVVSQILLKTKAGDDRIAAHEIMLGTPAIRNLIREGKVA 300 +DVFP DEK+MVR+MLSESL AV+SQ LLKT+ G RIAAHEIM+ TPAIR+LIRE K++ Sbjct: 241 VDVFPSDEKEMVRTMLSESLEAVISQTLLKTRDGSGRIAAHEIMIATPAIRHLIRENKIS 300 Query: 301 QMVSVMQTSGGAGMQTLDHCLGDLLRRDLITTETARAASRTPGQFA 346 QM S+MQTS G GMQTLD CL +L++R I ARA ++ P FA Sbjct: 301 QMYSMMQTSSGMGMQTLDQCLSELIKRSAINYADARAIAKNPDAFA 346