BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0239.p         (143 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E5UGM9.1 E5UGM9_ALCXX HxlR family Transcriptional regulator           141   3e-32
B8L538.1 B8L538_9GAMM Transcriptional regulatory protein              137   4e-31
B4SMR9.1 B4SMR9_STRM5 Transcriptional regulator, HxlR family          137   5e-31
E2SUX2.1 E2SUX2_9RALS Transcriptional regulator, PadR family          137   8e-31
E3HLR4.1 E3HLR4_ACHXA HxlR-like helix-turn-helix family protein 4     135   2e-30

>E5UGM9.1 E5UGM9_ALCXX HxlR family Transcriptional regulator
          Length = 128

 Score =  141 bits (355), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 64/104 (61%), Positives = 82/104 (78%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D++  ACPSR+ALEL+  KW  L+ PALA GP+RN+ LLRK+ GISQKM+TQTL++LER+
Sbjct: 10  DVFDAACPSRRALELISGKWVPLVLPALARGPLRNNELLRKLGGISQKMMTQTLRDLERH 69

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADL 118
           GLV R ++ T  PHV Y L+ LG+SL+  L+ALD WAERHHA L
Sbjct: 70  GLVRREDMRTVPPHVRYHLTELGKSLNVALVALDRWAERHHAQL 113


>B8L538.1 B8L538_9GAMM Transcriptional regulatory protein
          Length = 119

 Score =  137 bits (346), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/112 (58%), Positives = 82/112 (73%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D+Y+  C +R AL L+  KW +L+ PALA GPMRN ALLRKIEG+SQK+LTQTL++LERN
Sbjct: 6   DVYAADCSARDALALISGKWVMLLLPALAQGPMRNGALLRKIEGLSQKVLTQTLRQLERN 65

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFD 126
           GLV RC+  +   HVEY L+ +  SL DTL ALD WAE +   L  AR++FD
Sbjct: 66  GLVERCDRGSKPLHVEYRLTEVARSLVDTLAALDRWAEHNFPALDAARDRFD 117


>B4SMR9.1 B4SMR9_STRM5 Transcriptional regulator, HxlR family
          Length = 119

 Score =  137 bits (345), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 64/112 (57%), Positives = 81/112 (72%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
           D+Y   C +R AL L+  KW +L+ PALA GP RN ALLRKIEGISQK+LTQTL++LERN
Sbjct: 6   DVYVADCSARDALALISGKWVMLLLPALAEGPQRNGALLRKIEGISQKVLTQTLRQLERN 65

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFD 126
           GL+ RC++ +   HVEY L+ +  +L DTL ALD WAE +   L  ARE+FD
Sbjct: 66  GLIERCDMGSKPLHVEYRLTTIARTLVDTLAALDRWAEHNFPALDAARERFD 117


>E2SUX2.1 E2SUX2_9RALS Transcriptional regulator, PadR family
          Length = 133

 Score =  137 bits (344), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/111 (59%), Positives = 85/111 (76%), Gaps = 2/111 (1%)

Query: 20  ACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKI-EGISQKMLTQTLKELERNGLVT 78
           ACPS +ALEL+  KWAL IFPAL  GP+RN+ LLR++  GISQKMLTQTL+ELE NGL+ 
Sbjct: 23  ACPSMRALELIAGKWALRIFPALENGPVRNNELLRRVGNGISQKMLTQTLRELEANGLIL 82

Query: 79  RCNLETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRARE-QFDNE 128
           R   ++  PHVEY LSPLGESL+ TL+ LD+W   H +D++R R+ Q D++
Sbjct: 83  RTIYDSVPPHVEYRLSPLGESLNRTLVGLDDWVRAHWSDMERIRKSQVDSD 133


>E3HLR4.1 E3HLR4_ACHXA HxlR-like helix-turn-helix family protein 4
          Length = 133

 Score =  135 bits (340), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/110 (58%), Positives = 83/110 (75%)

Query: 4   VKKLSVEEPQTDIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKM 63
           +KKL+   P  D++  ACPSR+ALEL+  KW  LI PAL  GP+RN+ LLR+++GISQK+
Sbjct: 1   MKKLAALSPAGDVFDAACPSRRALELIAGKWVPLILPALEHGPLRNNELLRRLDGISQKV 60

Query: 64  LTQTLKELERNGLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAER 113
           +TQTL+ELER+GLV R +L T  PHV Y LS LG SL+  L+ALD WAE+
Sbjct: 61  MTQTLRELERHGLVLREDLGTVPPHVSYRLSELGRSLNVALVALDRWAEQ 110