BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0238.p         (105 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

E3HLR3.1 E3HLR3_ACHXA Quaternary ammonium compound-resistance pr...   139   2e-31
E5UGN0.1 E5UGN0_ALCXX Quaternary ammonium compound-resistance pr...   132   1e-29
E2SUX0.1 E2SUX0_9RALS Quaternary ammonium compound-resistance pr...   123   1e-26
B3R221.1 B3R221_CUPTR Multidrug efflux system protein; quarterna...   113   1e-23
E6V5K1.1 E6V5K1_VARPD Small multidrug resistance protein              111   3e-23

>E3HLR3.1 E3HLR3_ACHXA Quaternary ammonium compound-resistance protein SugE 3
          Length = 105

 Score =  139 bits (349), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/105 (68%), Positives = 84/105 (80%)

Query: 1   MAWVFLSLASVVEIIMAIALKYANGWTRLTPSLIGVGAAACSVLFLTLAMRSLPAGTAYA 60
           MAW+ L  AS VEI+MA+ALKYA+GWTR  PS+IG+ AA  SV  LTLAM+ LPAGTAYA
Sbjct: 1   MAWLILVAASAVEIVMALALKYADGWTRFWPSVIGIAAALGSVFLLTLAMKQLPAGTAYA 60

Query: 61  IWTGTGSVGVAVLGIYLFNDALSPLRLLCIALIIGGTIGLRLLDA 105
           IWTG GSVG+ VLGI LF D+ S  RLLCIALI+GG  GL+LL+A
Sbjct: 61  IWTGIGSVGITVLGIMLFGDSPSAARLLCIALIVGGVAGLKLLEA 105


>E5UGN0.1 E5UGN0_ALCXX Quaternary ammonium compound-resistance protein
          Length = 105

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/105 (66%), Positives = 81/105 (77%)

Query: 1   MAWVFLSLASVVEIIMAIALKYANGWTRLTPSLIGVGAAACSVLFLTLAMRSLPAGTAYA 60
           MAW  L  AS VEI+MA+ALKYA+GWTR  PS IG+ AA  S+  LTLAMR LPAGTAYA
Sbjct: 1   MAWWILLAASAVEIVMALALKYADGWTRFWPSAIGIAAALGSIFLLTLAMRHLPAGTAYA 60

Query: 61  IWTGTGSVGVAVLGIYLFNDALSPLRLLCIALIIGGTIGLRLLDA 105
           +WTG GSVG+ VLGI LF D+ S  RL CIALI+GG  GL+LL+A
Sbjct: 61  VWTGIGSVGITVLGIVLFGDSPSVARLACIALIVGGVAGLKLLEA 105


>E2SUX0.1 E2SUX0_9RALS Quaternary ammonium compound-resistance protein SugE
          Length = 109

 Score =  123 bits (308), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/104 (59%), Positives = 76/104 (73%)

Query: 2   AWVFLSLASVVEIIMAIALKYANGWTRLTPSLIGVGAAACSVLFLTLAMRSLPAGTAYAI 61
           AW++L  A  VEI MA++LK+A GWTR  PS++G+  A  SV  LT AMR LPAGTAYAI
Sbjct: 5   AWLWLLAAGAVEIAMAVSLKFAQGWTRPIPSVLGIVTALASVFLLTHAMRGLPAGTAYAI 64

Query: 62  WTGTGSVGVAVLGIYLFNDALSPLRLLCIALIIGGTIGLRLLDA 105
           WTG GSVGV VLGI LF +++ P RL CI L+I GT+GL   +A
Sbjct: 65  WTGIGSVGVTVLGIVLFGESMQPARLACIGLVIAGTVGLNFFNA 108


>B3R221.1 B3R221_CUPTR Multidrug efflux system protein; quarternary ammonium
           compound transport protein (SMR family)
          Length = 105

 Score =  113 bits (282), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/105 (53%), Positives = 77/105 (73%)

Query: 1   MAWVFLSLASVVEIIMAIALKYANGWTRLTPSLIGVGAAACSVLFLTLAMRSLPAGTAYA 60
           MAW  L LA ++EI+MA+ALK+ +GWTRL P+ +G+GAA  S+  L+ A+R LP GTAYA
Sbjct: 1   MAWTLLVLAGLIEIVMALALKHTDGWTRLGPTALGIGAALASIYLLSAALRHLPVGTAYA 60

Query: 61  IWTGTGSVGVAVLGIYLFNDALSPLRLLCIALIIGGTIGLRLLDA 105
           IWTG G++GV ++GI    ++ SPLRL+ I L+  G  GL+LL A
Sbjct: 61  IWTGIGAIGVTLIGILFLGESASPLRLVLIGLVFVGIGGLKLLPA 105


>E6V5K1.1 E6V5K1_VARPD Small multidrug resistance protein
          Length = 106

 Score =  111 bits (278), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/103 (52%), Positives = 76/103 (73%)

Query: 1   MAWVFLSLASVVEIIMAIALKYANGWTRLTPSLIGVGAAACSVLFLTLAMRSLPAGTAYA 60
           MAW  L +A ++EI+ A A+K + G+TRL P+L  VGA   SV+ L L+MR+LP GT YA
Sbjct: 1   MAWTLLGIAGLLEIVFAFAMKSSEGFTRLVPALFTVGAGLSSVVLLALSMRTLPMGTGYA 60

Query: 61  IWTGTGSVGVAVLGIYLFNDALSPLRLLCIALIIGGTIGLRLL 103
           +WTG G+ G A++G+ +  D+ +PLRLLCIALI+ G IGL+L+
Sbjct: 61  VWTGIGAAGTAIVGMAVLGDSAAPLRLLCIALILAGVIGLKLV 103