BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0237.p (472 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQX2.1 D8IQX2_HERSS ATP-dependent RNA helicase protein EC=3.-.-.- 709 0.0 A4G716.1 A4G716_HERAR ATP-dependent RNA helicase EC=3.6.1.- 669 0.0 F1VYT7.1 F1VYT7_9BURK ATP-dependent RNA helicase RhlE 663 0.0 A6SXJ0.1 A6SXJ0_JANMA ATP-dependent RNA helicase 662 0.0 A2W7N1.1 A2W7N1_9BURK Superfamily I DNA and RNA helicase 639 0.0 >D8IQX2.1 D8IQX2_HERSS ATP-dependent RNA helicase protein EC=3.-.-.- Length = 520 Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/392 (87%), Positives = 370/392 (94%) Query: 1 MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLGGGDLLAGAQTGTGKTAGFTLPLL 60 MSFS+LGLS+EIVRAV+EQGYT+PTPIQ QAVPAVL GGDLLAGAQTGTGKTAGFTLPLL Sbjct: 1 MSFSALGLSDEIVRAVSEQGYTSPTPIQAQAVPAVLSGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 QRLSSVERVKVNGHVPIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINPQI 120 QRLS++ R K+NGHVPIRALIL PTRELAAQVEESVR YGKYLPLTSACIFGGVGINPQI Sbjct: 61 QRLSAMPRQKINGHVPIRALILAPTRELAAQVEESVRQYGKYLPLTSACIFGGVGINPQI 120 Query: 121 RLLKQGVDILVATPGRLLDHMQQNTVDLKSVQVLILDEADRMLDMGFIRDIKKILAVLPK 180 LLK+GVDILVATPGRLLDHMQQ TV+L+ +Q+L+LDEADRMLDMGFIRDI+K+LA LP Sbjct: 121 TLLKRGVDILVATPGRLLDHMQQGTVNLQHIQILVLDEADRMLDMGFIRDIRKVLAALPP 180 Query: 181 KRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLAHL 240 KRQNLLFSATF+DEIK LAD LLN+PA+IEVARRNSTVEVI QKIHPVDRDKKHP+LAHL Sbjct: 181 KRQNLLFSATFADEIKKLADSLLNNPALIEVARRNSTVEVIAQKIHPVDRDKKHPMLAHL 240 Query: 241 IKTNQWNQVLVFTRTKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQAL 300 IKT+QW QVLVFTRTKHGANKLVEQL RD ITAMAIHGNKSQ+ART+ALA+FKDGKL AL Sbjct: 241 IKTHQWKQVLVFTRTKHGANKLVEQLGRDGITAMAIHGNKSQSARTKALAEFKDGKLTAL 300 Query: 301 IATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLLND 360 IATDIAARGIDIDQLPHVVNYDLPNV EDYVHRIGRTGRAGATG AVSLVC+DERDLL+D Sbjct: 301 IATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCIDERDLLHD 360 Query: 361 IERFIKREIPVEIVPGFEPDPKAKPQPIQLRS 392 IERFIKREIPVE++ GFEPDP AKPQPIQLRS Sbjct: 361 IERFIKREIPVEVIAGFEPDPTAKPQPIQLRS 392 >A4G716.1 A4G716_HERAR ATP-dependent RNA helicase EC=3.6.1.- Length = 449 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/474 (71%), Positives = 378/474 (79%), Gaps = 27/474 (5%) Query: 1 MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLGGGDLLAGAQTGTGKTAGFTLPLL 60 MSF+ LGL++ IVRAVTE GY+ PTPIQ QA+PAVL GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 1 MSFTDLGLADGIVRAVTEHGYSIPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 QRL--SSVERVKVNGHVPIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINP 118 RL S + PIRAL+LTPTRELAAQVEESVR Y KYL L SA IFGGVGINP Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYSKYLNLNSAVIFGGVGINP 120 Query: 119 QIRLLKQGVDILVATPGRLLDHMQQNTVDLKSVQVLILDEADRMLDMGFIRDIKKILAVL 178 QI+LLK GVDILVATPGRLLDHMQQ TV+L V++L+LDEADRMLDMGFI+DI+++LAVL Sbjct: 121 QIKLLKHGVDILVATPGRLLDHMQQGTVNLSKVEILVLDEADRMLDMGFIKDIRRVLAVL 180 Query: 179 PKKRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLA 238 PK RQNLLFSATFS+EIKALADGLLNSPAMIEVARRNSTVEVI QKIHPVDRDKKHP+LA Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPAMIEVARRNSTVEVIEQKIHPVDRDKKHPMLA 240 Query: 239 HLIKTNQWNQVLVFTRTKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQ 298 HLIKTN W+QVLVFTRTKHGANKLVEQL +D I+ MAIHGNKSQ+ARTRAL++FKDG LQ Sbjct: 241 HLIKTNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQ 300 Query: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLL 358 L+ATDIAARGIDIDQLPHVVNYDLPNV EDYVHRIGRTGRAGATG AVSLVCVDE D+L Sbjct: 301 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELDML 360 Query: 359 NDIERFIKREIPVEIVPGFEPDPKAKPQPIQLRSEGHRGGGGGGRRPQGGGGGRSANGGG 418 DIE+ IKR++P E++ GFEPD AKPQPIQ RS GRRPQG Sbjct: 361 KDIEKLIKRKLPSEVIVGFEPDLNAKPQPIQRRSN-----DAPGRRPQG----------- 404 Query: 419 GNRSQQPKTGGQGQAQAAKPRQGGPAKPQGAGPAQNRGPAARPASTHRSGGRGR 472 G A++AK P+ P G + ARPA+ HRSGGRGR Sbjct: 405 ---------RGNAPAKSAKAPGAKPSGPNGQVRSFGGNANARPAAPHRSGGRGR 449 >F1VYT7.1 F1VYT7_9BURK ATP-dependent RNA helicase RhlE Length = 446 Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/474 (71%), Positives = 375/474 (79%), Gaps = 30/474 (6%) Query: 1 MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLGGGDLLAGAQTGTGKTAGFTLPLL 60 MSF+ LGLS +IVRAVTE GYT PTPIQ QA+PAVL GGDLLAGAQTGTGKTAGFTLPLL Sbjct: 1 MSFAQLGLSADIVRAVTEHGYTIPTPIQAQAIPAVLLGGDLLAGAQTGTGKTAGFTLPLL 60 Query: 61 QRLSSVERVKVNGHV--PIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINP 118 RLS+ PIRALIL PTRELAAQVEESVR YGKYL LTS IFGGVGINP Sbjct: 61 HRLSTSTSAPTTNTATRPIRALILAPTRELAAQVEESVRTYGKYLKLTSTVIFGGVGINP 120 Query: 119 QIRLLKQGVDILVATPGRLLDHMQQNTVDLKSVQVLILDEADRMLDMGFIRDIKKILAVL 178 QI++LK GVDILVATPGRLLDHM Q TV+L V++LILDEADRMLDMGFI+DIKK+LAVL Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMGQGTVNLSQVEILILDEADRMLDMGFIKDIKKVLAVL 180 Query: 179 PKKRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLA 238 PKKRQNLLFSATFS+EIK LADGLLN+P MIEVARRNSTVE+I QKI+PVDRDKKHPLLA Sbjct: 181 PKKRQNLLFSATFSEEIKTLADGLLNAPKMIEVARRNSTVEIIAQKIYPVDRDKKHPLLA 240 Query: 239 HLIKTNQWNQVLVFTRTKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQ 298 HLIKTN W QVLVFTRTKHGANKLVEQL +D I+ MAIHGNKSQ+ART+ALA+FKDGKLQ Sbjct: 241 HLIKTNNWPQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTKALAEFKDGKLQ 300 Query: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLL 358 L+ATDIAARGIDIDQLPHVVNYDLPN+ EDYVHRIGRTGRAGATG AVSLVCVDE ++L Sbjct: 301 VLVATDIAARGIDIDQLPHVVNYDLPNIPEDYVHRIGRTGRAGATGEAVSLVCVDEHEML 360 Query: 359 NDIERFIKREIPVEIVPGFEPDPKAKPQPIQLRSEGHRGGGGGGRRPQGGGGGRSANGGG 418 DIE+ IKRE+P E+VPGFEPDP A+ QPIQLRS Sbjct: 361 RDIEKLIKRELPKEVVPGFEPDPNARAQPIQLRS-------------------------- 394 Query: 419 GNRSQQPKTGGQGQAQAAKPRQGGPAKPQGAGPAQNRGPAARPASTHRSGGRGR 472 + QG+ K R AKPQG GP+++ G + ++ RSGGRGR Sbjct: 395 -GNGGGGRGQPQGRTAVVKTRVSPTAKPQGGGPSKSFG-TTKTSAPRRSGGRGR 446 >A6SXJ0.1 A6SXJ0_JANMA ATP-dependent RNA helicase Length = 448 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/489 (69%), Positives = 375/489 (76%), Gaps = 58/489 (11%) Query: 1 MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLGGGDLLAGAQTGTGKTAGFTLPLL 60 MSF+ LGL+E IVRAVTE GYT PTPIQ QA+PAVL GGDLLAGAQTGTGKTAGFTLP+L Sbjct: 1 MSFTDLGLAEGIVRAVTESGYTNPTPIQAQAIPAVLAGGDLLAGAQTGTGKTAGFTLPIL 60 Query: 61 QRL--SSVERVKVNGHVPIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINP 118 RL S + PIRAL+LTPTRELAAQVEESVR YGKYL L SA IFGGVGINP Sbjct: 61 HRLATSGTPHASASAQRPIRALVLTPTRELAAQVEESVRTYGKYLNLNSAVIFGGVGINP 120 Query: 119 QIRLLKQGVDILVATPGRLLDHMQQNTVDLKSVQVLILDEADRMLDMGFIRDIKKILAVL 178 QI++LK GVDILVATPGRLLDHMQQ TV+L +Q+L+LDEADRMLDMGFI+DI+++LA L Sbjct: 121 QIKMLKHGVDILVATPGRLLDHMQQGTVNLNHIQILVLDEADRMLDMGFIKDIRRVLAAL 180 Query: 179 PKKRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLA 238 PK RQNLLFSATFS+EIKALADGLLNSPA IEVARRNSTVE+I QKIHPVDRDKKHP+LA Sbjct: 181 PKNRQNLLFSATFSNEIKALADGLLNSPATIEVARRNSTVEIIEQKIHPVDRDKKHPMLA 240 Query: 239 HLIKTNQWNQVLVFTRTKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQ 298 HLIK+N W+QVLVFTRTKHGANKLVEQL +D I+ MAIHGNKSQ+ARTRAL++FKDG LQ Sbjct: 241 HLIKSNNWSQVLVFTRTKHGANKLVEQLEKDGISGMAIHGNKSQSARTRALSEFKDGSLQ 300 Query: 299 ALIATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLL 358 L+ATDIAARGIDIDQLPHVVNYDLPNV EDYVHRIGRTGRAGATG AVSLVCVDE ++L Sbjct: 301 VLVATDIAARGIDIDQLPHVVNYDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELEML 360 Query: 359 NDIERFIKREIPVEIVPGFEPDPKAKPQPIQLRSEGHRGGGGGGRRPQGGG--------- 409 DIE+ IKR++P E++PGFEPD AKPQPIQ RS GRRPQG G Sbjct: 361 KDIEKLIKRKLPSEVIPGFEPDLNAKPQPIQRRSN-----DAPGRRPQGQGRNAPAKSAK 415 Query: 410 ------GGRSANGGGGNRSQQPKTGGQGQAQAAKPRQGGPAKPQGAGPAQNRGPAARPAS 463 G S G GGN + ARPA+ Sbjct: 416 APAPKPNGSSRGGFGGNSN------------------------------------ARPAA 439 Query: 464 THRSGGRGR 472 HRSGGRGR Sbjct: 440 PHRSGGRGR 448 >A2W7N1.1 A2W7N1_9BURK Superfamily I DNA and RNA helicase Length = 480 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/445 (71%), Positives = 361/445 (81%), Gaps = 3/445 (0%) Query: 1 MSFSSLGLSEEIVRAVTEQGYTTPTPIQMQAVPAVLGGGDLLAGAQTGTGKTAGFTLPLL 60 MSF SLGL+E +V+AV E GYT+PTPIQ QA+PAVLGGGDLLAGAQTGTGKTAGFTLP+L Sbjct: 4 MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL 63 Query: 61 QRLSSVERVKVNGHVPIRALILTPTRELAAQVEESVRVYGKYLPLTSACIFGGVGINPQI 120 QRL + N +RALILTPTRELAAQVEESVR Y KYL L S +FGGV INPQI Sbjct: 64 QRLHTFYAEHRNAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI 123 Query: 121 RLLKQGVDILVATPGRLLDHMQQNTVDLKSVQVLILDEADRMLDMGFIRDIKKILAVLPK 180 LK+GVDI+VATPGRLLDHMQQ T+DL S+ +L+LDEADRMLDMGFI DIK++LA LP Sbjct: 124 DALKRGVDIVVATPGRLLDHMQQKTIDLSSLDILVLDEADRMLDMGFIHDIKRVLAKLPP 183 Query: 181 KRQNLLFSATFSDEIKALADGLLNSPAMIEVARRNSTVEVIGQKIHPVDRDKKHPLLAHL 240 +RQNLLFSATFSDEIKALAD LL+SPA+IEVARRN+T E + QKIHPVDRD+K LL HL Sbjct: 184 RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRELLTHL 243 Query: 241 IKTNQWNQVLVFTRTKHGANKLVEQLARDEITAMAIHGNKSQAARTRALADFKDGKLQAL 300 I+ + W QVLVFTRTKHGAN+L EQL +D I+AMAIHGNKSQ+ARTRAL +FK+ LQ L Sbjct: 244 IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALTEFKNSTLQVL 303 Query: 301 IATDIAARGIDIDQLPHVVNYDLPNVSEDYVHRIGRTGRAGATGSAVSLVCVDERDLLND 360 +ATDIAARGIDIDQLPHVVN+DLPNV EDYVHRIGRTGRAGATG AVSLVCVDE+ LL D Sbjct: 304 VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD 363 Query: 361 IERFIKREIPVEIVPGFEPDPKAKPQPI-QLRSEGHRGGGGGG-RRPQGGGGGRSANGGG 418 IER IKREIP E++ GFEPDP AKP+PI Q R + RGG GG R+P+ GG G+ A Sbjct: 364 IERLIKREIPQEVIAGFEPDPNAKPEPIQQRRGQQPRGGAAGGNRQPRAGGAGQPAAKRD 423 Query: 419 GN-RSQQPKTGGQGQAQAAKPRQGG 442 GN + K G Q AAKPR G Sbjct: 424 GNAHPKAAKCDGNAQLFAAKPRTSG 448