BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0232.p         (145 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G7I2.1 A4G7I2_HERAR Putative universel stress protein UspA-like     183   6e-45
A4G5F2.1 A4G5F2_HERAR Putative universal stress protein UspA          147   5e-34
A4G7J1.1 A4G7J1_HERAR Putative universel stress protein UspA          147   7e-34
D8IVG0.1 D8IVG0_HERSS Universal stress protein                        135   2e-30
F1W3P2.1 F1W3P2_9BURK Universal stress protein                        132   2e-29

>A4G7I2.1 A4G7I2_HERAR Putative universel stress protein UspA-like
          Length = 140

 Score =  183 bits (465), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 116/145 (80%), Gaps = 5/145 (3%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           MLK ILLATDGS+LSK+AV AA+DFAASYGSKIVGL+V+E+FP L +      YDL+ +E
Sbjct: 1   MLKTILLATDGSDLSKKAVTAAIDFAASYGSKIVGLSVAEVFPELFL-----DYDLRAIE 55

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
            ++  ++  +A ++ +CAKKAG  CEVHTV G H  +EI++ A ++ CD+IFMASHG+KG
Sbjct: 56  EDMQKRAVSDANFVEECAKKAGVACEVHTVTGVHPYQEIIKAANDFHCDAIFMASHGKKG 115

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           +DK++LGSETQKVL +S IPVLV++
Sbjct: 116 IDKILLGSETQKVLAHSTIPVLVYR 140


>A4G5F2.1 A4G5F2_HERAR Putative universal stress protein UspA
          Length = 143

 Score =  147 bits (371), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 82/150 (54%), Positives = 103/150 (68%), Gaps = 12/150 (8%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M KKILLATDGSELS +AV AA+ FA  +GSKIVGL+V+ I+P   +      Y ++   
Sbjct: 1   MFKKILLATDGSELSDKAVQAALQFAKEHGSKIVGLSVATIYPYFPV------YGMEATS 54

Query: 61  AEIFAQ--SKLNAGYIADCAKKA---GADCEVHTVKGTHANEEILRFAKEYGCDSIFMAS 115
            E FAQ  SK    Y+   A  A   G D EVH V+GT A++EI++ A +Y CD+IFMAS
Sbjct: 55  GE-FAQAISKEAEKYVHKIATHAASLGVDAEVHVVEGTSASDEIIKAADKYHCDAIFMAS 113

Query: 116 HGRKGLDKLMLGSETQKVLTYSKIPVLVFK 145
           HGRKGLDK +LGSE QKVL +SK+PV +FK
Sbjct: 114 HGRKGLDKFLLGSEAQKVLVHSKLPVTIFK 143


>A4G7J1.1 A4G7J1_HERAR Putative universel stress protein UspA
          Length = 143

 Score =  147 bits (370), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 81/145 (55%), Positives = 102/145 (70%), Gaps = 2/145 (1%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M KKILLATDGS+LS +AV A + FA  +GSKIVGL+V+ I+P L +P + A    + V+
Sbjct: 1   MFKKILLATDGSKLSDKAVQATLQFAKEHGSKIVGLSVATIYPYLPVPGMEA-ISGEFVD 59

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
           A I  Q++ N   I+  A   G D EVH  +G+ A EEI++ A +Y CDSIFMASHGR G
Sbjct: 60  A-ITNQAEKNVEKISALAASLGVDAEVHVAEGSSACEEIIKTAAKYHCDSIFMASHGRTG 118

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           LDKLMLGSE QKVL YSK+PV + K
Sbjct: 119 LDKLMLGSEAQKVLAYSKLPVTIIK 143


>D8IVG0.1 D8IVG0_HERSS Universal stress protein
          Length = 157

 Score =  135 bits (339), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 1/145 (0%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           + KKIL+ TDGS+ S+RAV AAV FA   GS +VGL+V+E      + + G   +   VE
Sbjct: 14  IFKKILVPTDGSDASERAVQAAVQFAKESGSSLVGLSVAEDIVQWAVID-GTAINYLQVE 72

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
            EI   +K N   +A  AK A   CE  TVK  H  EEIL  A    CD+IFMASHGRKG
Sbjct: 73  NEILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKG 132

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           L++ +LGS+TQKVL  + IPVLVF+
Sbjct: 133 LERFILGSQTQKVLANATIPVLVFR 157


>F1W3P2.1 F1W3P2_9BURK Universal stress protein
          Length = 145

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 67/145 (46%), Positives = 92/145 (63%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M K IL+ TDGS LS +A+ AA++FA   G++IVGL+V+E +P   + E     D    +
Sbjct: 1   MFKTILVPTDGSALSDKAIHAAIEFAQLTGARIVGLSVAEPYPYSPLSEGAITIDSTAYQ 60

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
            ++   ++ N   IAD A  A   CE H  +     EEI+  A  +GCD +FMASHGRKG
Sbjct: 61  EKMLEIARSNVRQIADAASAANVTCETHVRESFSPYEEIVSVADLHGCDVVFMASHGRKG 120

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           L+KL +GSETQKVL +S +PVLVF+
Sbjct: 121 LNKLFVGSETQKVLAHSTLPVLVFR 145