BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0209.p (263 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQW6.1 D8IQW6_HERSS ABC-type proline/glycine betaine transport... 407 e-112 A2RPS3.1 A2RPS3_HERSE ABC-type proline/glycine betaine transport... 407 e-112 E5AV93.1 E5AV93_BURRH Glycine betaine-binding protein 310 2e-82 Q13SD7.1 Q13SD7_BURXL ABC glycine betaine/choline/proline family... 306 3e-81 Q46YC7.1 Q46YC7_CUPPJ Substrate-binding region of ABC-type glyci... 304 8e-81 >D8IQW6.1 D8IQW6_HERSS ABC-type proline/glycine betaine transport system, periplasmic binding component protein Length = 306 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/263 (72%), Positives = 231/263 (87%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 L+LS MTAQYLRAKGYD +L+NGLG+TLMR A ES QLD+VW+YTGT+LIVYNH+++KLD Sbjct: 44 LLLSDMTAQYLRAKGYDTELKNGLGTTLMRSALESGQLDIVWDYTGTALIVYNHIEDKLD 103 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 + YQ+VKELD GL WLN+S LNNTYAFAMP+ LAD+ I++L+DLA+ I ++ + G Sbjct: 104 PDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRALADKYNIHSLQDLAKRINEDDKEG 163 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 G+P LMGVDYEFASRPDGL PMQ+LYGF+LDRSEVKQMDPGLVYTAL+NEQL VGLTY+S Sbjct: 164 GQPHLMGVDYEFASRPDGLGPMQQLYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYAS 223 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGRIKGF+L+LLED+KGYFAAYKATPVVR+E+L +HP+LA+QLN L+A IDT MT++NK Sbjct: 224 DGRIKGFDLQLLEDDKGYFAAYKATPVVRQEILAKHPKLAEQLNELAAKIDTATMTELNK 283 Query: 241 RVDIDQEPIGKVVTEFLQQQGLI 263 RVDIDQEP+ KV +FL+Q GLI Sbjct: 284 RVDIDQEPVAKVAADFLKQAGLI 306 >A2RPS3.1 A2RPS3_HERSE ABC-type proline/glycine betaine transport system, periplasmic (Osmoprotectant) binding component pr Length = 306 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 190/263 (72%), Positives = 231/263 (87%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 L+LS MTAQYLRAKGYD +L+NGLG+TLMR A ES QLD+VW+YTGT+LIVYNH+++KLD Sbjct: 44 LLLSDMTAQYLRAKGYDTELKNGLGTTLMRSALESGQLDIVWDYTGTALIVYNHIEDKLD 103 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 + YQ+VKELD GL WLN+S LNNTYAFAMP+ LAD+ I++L+DLA+ I ++ + G Sbjct: 104 PDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRALADKYNIHSLQDLAKRINEDDKEG 163 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 G+P LMGVDYEFASRPDGL PMQ+LYGF+LDRSEVKQMDPGLVYTAL+NEQL VGLTY+S Sbjct: 164 GQPHLMGVDYEFASRPDGLGPMQQLYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYAS 223 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGRIKGF+L+LLED+KGYFAAYKATPVVR+E+L +HP+LA+QLN L+A IDT MT++NK Sbjct: 224 DGRIKGFDLQLLEDDKGYFAAYKATPVVRQEILAKHPKLAEQLNELAAKIDTATMTELNK 283 Query: 241 RVDIDQEPIGKVVTEFLQQQGLI 263 RVDIDQEP+ KV +FL+Q GLI Sbjct: 284 RVDIDQEPVAKVAADFLKQAGLI 306 >E5AV93.1 E5AV93_BURRH Glycine betaine-binding protein Length = 300 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/262 (56%), Positives = 194/262 (74%), Gaps = 2/262 (0%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 L+L+ +T+QYLR++GY V+ R+GLGS LMR A E++QLD+VW+YTGT+LIVYN + EKLD Sbjct: 40 LLLAEITSQYLRSRGYTVESRSGLGSVLMRSALENRQLDIVWDYTGTALIVYNRIHEKLD 99 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 + Y+RV++LD+ GLVWL S LNNTYA AMP + A GI+T+ LA I Q+ Sbjct: 100 PQTAYRRVRDLDKPRGLVWLKPSALNNTYALAMPSERAKRDGIHTISQLAAKIQQDDPR- 158 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 K +D EFA+RPDGL P+Q LY +L RS++KQMD GLVYTAL N Q GL Y++ Sbjct: 159 -KRHWFAMDAEFANRPDGLRPLQALYDLRLRRSDIKQMDSGLVYTALHNNQAMFGLVYTT 217 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGRIKGF + +L+D+ G+F AY ATPVVR +VL +HP+LA QL+ALSA I++E M++MNK Sbjct: 218 DGRIKGFGITVLDDDLGFFPAYNATPVVRRDVLDQHPELAKQLDALSAQINSEVMSEMNK 277 Query: 241 RVDIDQEPIGKVVTEFLQQQGL 262 RVDID+E I V +FL+ L Sbjct: 278 RVDIDEESISAVAADFLRTHAL 299 >Q13SD7.1 Q13SD7_BURXL ABC glycine betaine/choline/proline family transporter, periplasmic ligand binding protein Length = 298 Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 142/261 (54%), Positives = 190/261 (72%), Gaps = 3/261 (1%) Query: 2 ILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLDA 61 +L+ +T+QYLRAKGY +D R GLGSTL+R AQE+ Q+D+ WEYTGT+ IVYN + EKLD Sbjct: 40 VLTEITSQYLRAKGYTIDARTGLGSTLLRSAQENGQVDITWEYTGTAAIVYNKITEKLDP 99 Query: 62 EATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAGG 121 + Y+RVK LD GLVWL+ S LNNTYA +PQ++A + GI T+ LA + E + Sbjct: 100 KTMYERVKALDAKRGLVWLDCSPLNNTYALGLPQQVAQQTGIRTISQLAAKMAAEPK--- 156 Query: 122 KPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSSD 181 K + +D EFA+RPDGL+P++ YG Q R E +QMDPGLVYTAL N Q+ +GL Y++D Sbjct: 157 KKHVFAMDAEFANRPDGLKPLEAAYGMQFSREETRQMDPGLVYTALHNNQVPIGLIYTTD 216 Query: 182 GRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNKR 241 GR+KGFN+ LED++ YF AY ATPVVR+ L ++PQLA QLNALS A++ + M +MNK+ Sbjct: 217 GRVKGFNIVPLEDDRHYFPAYNATPVVRKATLDQNPQLAPQLNALSDALNNDTMLEMNKQ 276 Query: 242 VDIDQEPIGKVVTEFLQQQGL 262 VD+D P+ +V EFL+ L Sbjct: 277 VDVDGRPVREVAAEFLRTHKL 297 >Q46YC7.1 Q46YC7_CUPPJ Substrate-binding region of ABC-type glycine betaine transport system Length = 315 Score = 304 bits (779), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 149/263 (56%), Positives = 191/263 (72%), Gaps = 2/263 (0%) Query: 1 LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60 LILSSMT+QYLRAKG +L +GLGSTLMR+A E+ QLDVVW+YTGT+LIV+N V+EKLD Sbjct: 55 LILSSMTSQYLRAKGLGTELTSGLGSTLMRQAMENGQLDVVWDYTGTALIVFNKVEEKLD 114 Query: 61 AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120 A+A+Y RVK LD GLVWL S +NNTYA AMP++ A G+ TL A + + + Sbjct: 115 AKASYARVKTLDAARGLVWLEPSRINNTYALAMPKQRAQASGVTTLSAYAEKMRKAGEDA 174 Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180 P VD EFA+RPDGLEP++ Y R +V Q+DPGLVYTAL+N Q+D+GL Y++ Sbjct: 175 QHP--FAVDMEFAARPDGLEPLKAQYKLPFKRRDVIQLDPGLVYTALKNNQVDMGLVYTT 232 Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240 DGR+KGF L LLED+ +F Y A PVVR+ VL +HP+LA L+ALSA +D MT+MN Sbjct: 233 DGRVKGFELVLLEDDLHFFPDYSAVPVVRKAVLDKHPELATLLDALSAKLDNASMTEMNY 292 Query: 241 RVDIDQEPIGKVVTEFLQQQGLI 263 +VDI Q+P+ KV +FL+ GLI Sbjct: 293 QVDIGQQPVDKVAADFLRSHGLI 315