BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0201.p (287 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1VNV0.1 A1VNV0_POLNA ATP dependent DNA ligase 348 4e-94 E6V4U6.1 E6V4U6_VARPD ATP dependent DNA ligase 347 1e-93 Q12AV7.1 Q12AV7_POLSJ ATP dependent DNA ligase 346 2e-93 A4G5U7.1 A4G5U7_HERAR ATP-dependent DNA ligase EC=6.5.1.1 343 2e-92 A1WNL0.1 A1WNL0_VEREI ATP dependent DNA ligase 343 2e-92 >A1VNV0.1 A1VNV0_POLNA ATP dependent DNA ligase Length = 295 Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 169/257 (65%), Positives = 197/257 (76%), Gaps = 5/257 (1%) Query: 36 VMLANVYRPGIALDDYWVSEKYDGVRALWDGRRLLTRGGETIHAPAWFLAGWPAMALDGE 95 +MLANVYR GI L DYWVSEK+DGVR WDG+ L TRGGE + APAWF AGWP +A+DGE Sbjct: 39 LMLANVYRSGIVLADYWVSEKFDGVRGYWDGQALWTRGGERVAAPAWFTAGWPNVAMDGE 98 Query: 96 LWAGRGGFQQAVSTVRQQTPDDKAWSKMRFMVFDMPGQTGDFTLRLRATRSTVQKMNLPW 155 LWAG G F +AVSTVRQQTPDD AW MRFMVFD+P G FT R+ A V +++ W Sbjct: 99 LWAGHGQFPKAVSTVRQQTPDDAAWRSMRFMVFDLPAHGGPFTERIPALNGVVSRIDQHW 158 Query: 156 VQAVEQRKVADHAALQVLLDRTVAQGGEGLMLHRGSSLYRAERNDDLLKFKPYEDTEARV 215 VQAVEQ KVA ALQ LL +TV GGEGLMLHRG+SLY+ +RNDDLLK K ++D+EARV Sbjct: 159 VQAVEQFKVASPQALQTLLSKTVKNGGEGLMLHRGASLYKGQRNDDLLKLKTHDDSEARV 218 Query: 216 TGHLPGKGKYAGMLGALQVETP-----EGVRFKLGSGLSDAQRRDPPPIGALVTYRYRGF 270 H+PG+GKYAG LGAL VE P RFKLG+G SDAQR++PP +G +TYR+RG Sbjct: 219 VAHVPGQGKYAGKLGALLVEMPAADGKPAQRFKLGTGFSDAQRQNPPAVGTRITYRFRGL 278 Query: 271 NDSGIPRFAVFMRVREE 287 NDSGIPRFA FMRVRE+ Sbjct: 279 NDSGIPRFASFMRVRED 295 >E6V4U6.1 E6V4U6_VARPD ATP dependent DNA ligase Length = 284 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 172/264 (65%), Positives = 198/264 (75%), Gaps = 1/264 (0%) Query: 25 LQAGAAAERAP-VMLANVYRPGIALDDYWVSEKYDGVRALWDGRRLLTRGGETIHAPAWF 83 +Q A AP +MLA+VYRP ++L DYWVSEKYDGVR WDG++L TRGGE + APAWF Sbjct: 17 VQPALARNAAPSLMLADVYRPSMSLADYWVSEKYDGVRGYWDGKQLWTRGGEPVAAPAWF 76 Query: 84 LAGWPAMALDGELWAGRGGFQQAVSTVRQQTPDDKAWSKMRFMVFDMPGQTGDFTLRLRA 143 +A P LDGELWAGRG F AVST R QTP+D AW +MRFMVFDMP Q GDFT RL A Sbjct: 77 IASLPKQQLDGELWAGRGRFSHAVSTARSQTPNDVAWREMRFMVFDMPAQPGDFTARLAA 136 Query: 144 TRSTVQKMNLPWVQAVEQRKVADHAALQVLLDRTVAQGGEGLMLHRGSSLYRAERNDDLL 203 R + + PWV V Q + HA LQ LLD+TV GGEGLMLHRGSS YR ERN+DLL Sbjct: 137 LRKLLPITDAPWVVLVPQERATTHAELQALLDKTVKMGGEGLMLHRGSSPYRGERNNDLL 196 Query: 204 KFKPYEDTEARVTGHLPGKGKYAGMLGALQVETPEGVRFKLGSGLSDAQRRDPPPIGALV 263 K KPY+D EARV GH+ GKG+ + LGAL VETPEG RFKLGSGL+DA+R +PP IGA V Sbjct: 197 KVKPYDDAEARVVGHVTGKGRNSHRLGALVVETPEGKRFKLGSGLTDAERENPPAIGAWV 256 Query: 264 TYRYRGFNDSGIPRFAVFMRVREE 287 TYR+ G N SG+PRFA FMRVRE+ Sbjct: 257 TYRFNGTNASGLPRFARFMRVRED 280 >Q12AV7.1 Q12AV7_POLSJ ATP dependent DNA ligase Length = 306 Score = 346 bits (888), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 170/258 (65%), Positives = 196/258 (75%), Gaps = 5/258 (1%) Query: 35 PVMLANVYRPGIALDDYWVSEKYDGVRALWDGRRLLTRGGETIHAPAWFLAGWPAMALDG 94 P+MLA VY G++L DYWVSEKYDGVR WDG +LLTRGGE I APAWF A WP +A+DG Sbjct: 46 PLMLAKVYHVGVSLADYWVSEKYDGVRGYWDGEKLLTRGGERIVAPAWFTADWPKVAMDG 105 Query: 95 ELWAGRGGFQQAVSTVRQQTPDDKAWSKMRFMVFDMPGQTGDFTLRLRATRSTVQKMNLP 154 ELWAGRG F +AVSTVRQQTPDD AW MRFMVFD+P Q G FT R+ A V +++ P Sbjct: 106 ELWAGRGQFAKAVSTVRQQTPDDAAWRAMRFMVFDLPAQGGPFTERIPALNGVVSRIDQP 165 Query: 155 WVQAVEQRKVADHAALQVLLDRTVAQGGEGLMLHRGSSLYRAERNDDLLKFKPYEDTEAR 214 WVQAV Q KVA+H ALQ LL T GEGLMLHRG+SLY +R DDLLK K +EDTEAR Sbjct: 166 WVQAVAQFKVANHRALQNLLATTEKHAGEGLMLHRGASLYMGQRTDDLLKVKTHEDTEAR 225 Query: 215 VTGHLPGKGKYAGMLGALQVETP-----EGVRFKLGSGLSDAQRRDPPPIGALVTYRYRG 269 V H+PGKGKY G+LGAL VE P G RFKLGSG +D QR++PP +G+ VTYR+RG Sbjct: 226 VVAHIPGKGKYVGVLGALLVEMPGVDGKPGRRFKLGSGFNDEQRQNPPVLGSTVTYRFRG 285 Query: 270 FNDSGIPRFAVFMRVREE 287 N SG+PRFA FMRVRE+ Sbjct: 286 LNGSGVPRFASFMRVRED 303 >A4G5U7.1 A4G5U7_HERAR ATP-dependent DNA ligase EC=6.5.1.1 Length = 297 Score = 343 bits (880), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 168/265 (63%), Positives = 197/265 (74%), Gaps = 1/265 (0%) Query: 23 CSLQAGAAAERAPVMLANVYRPGIALDDYWVSEKYDGVRALWDGRRLLTRGGETIHAPAW 82 S + G + R P+MLAN Y + L YWVSEKYDG+RA WDG + TRGGE IHAPAW Sbjct: 28 ASTEDGTSGAR-PLMLANSYHSNVDLSAYWVSEKYDGIRAYWDGEQFFTRGGERIHAPAW 86 Query: 83 FLAGWPAMALDGELWAGRGGFQQAVSTVRQQTPDDKAWSKMRFMVFDMPGQTGDFTLRLR 142 F AGWP +ALDGELW GRG F +AVST R+Q P+D AW KM FMVFD+P G F RL Sbjct: 87 FTAGWPQLALDGELWVGRGRFAEAVSTARRQKPEDDAWRKMHFMVFDLPLHGGVFDERLP 146 Query: 143 ATRSTVQKMNLPWVQAVEQRKVADHAALQVLLDRTVAQGGEGLMLHRGSSLYRAERNDDL 202 A ++ + K+++PWVQAV Q +V D +L+ LL +TV GGEGLMLHRG+SLYRA RNDDL Sbjct: 147 ALQTVIAKLDVPWVQAVRQIRVHDEHSLRTLLQKTVQAGGEGLMLHRGASLYRAVRNDDL 206 Query: 203 LKFKPYEDTEARVTGHLPGKGKYAGMLGALQVETPEGVRFKLGSGLSDAQRRDPPPIGAL 262 LK K +ED EARV HLPGKGK+ G LGAL VE P+G RF+LG+G SDAQR PP IG+ Sbjct: 207 LKLKLHEDAEARVIAHLPGKGKHQGRLGALLVEMPDGQRFRLGTGFSDAQRTSPPVIGSW 266 Query: 263 VTYRYRGFNDSGIPRFAVFMRVREE 287 VTYRYR N SGIPRFA FMRVRE+ Sbjct: 267 VTYRYRDKNRSGIPRFASFMRVRED 291 >A1WNL0.1 A1WNL0_VEREI ATP dependent DNA ligase Length = 337 Score = 343 bits (879), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 168/248 (67%), Positives = 190/248 (76%) Query: 40 NVYRPGIALDDYWVSEKYDGVRALWDGRRLLTRGGETIHAPAWFLAGWPAMALDGELWAG 99 NVYRPG+ L DYWVSEKYDGVR WDGR L TR GET+ APAWF AGWP ALDGELWAG Sbjct: 85 NVYRPGLPLADYWVSEKYDGVRGYWDGRALRTRSGETVAAPAWFTAGWPGTALDGELWAG 144 Query: 100 RGGFQQAVSTVRQQTPDDKAWSKMRFMVFDMPGQTGDFTLRLRATRSTVQKMNLPWVQAV 159 RG F A ST RQQ DD AW MRFMVFD+P G F RL A ++ V + PWVQAV Sbjct: 145 RGRFGHAQSTTRQQQADDNAWRSMRFMVFDLPRHGGRFDQRLPALKALVASIGQPWVQAV 204 Query: 160 EQRKVADHAALQVLLDRTVAQGGEGLMLHRGSSLYRAERNDDLLKFKPYEDTEARVTGHL 219 Q++VA AALQ LL RTV GGEGLMLHRG+SLY++ RNDDLLK K +ED EARV HL Sbjct: 205 PQQRVATDAALQALLQRTVRAGGEGLMLHRGASLYQSGRNDDLLKLKTHEDAEARVLAHL 264 Query: 220 PGKGKYAGMLGALQVETPEGVRFKLGSGLSDAQRRDPPPIGALVTYRYRGFNDSGIPRFA 279 PGKG++AG LGAL V P G RFKLGSG SDAQR DPPP+G+ VTYR+RG ++SG+PRFA Sbjct: 265 PGKGRHAGRLGALLVAMPSGQRFKLGSGFSDAQRADPPPVGSWVTYRFRGLHESGLPRFA 324 Query: 280 VFMRVREE 287 F+RVRE+ Sbjct: 325 SFVRVRED 332