BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0181.p         (122 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYI1.1 D8IYI1_HERSS Chemotaxis histidine kinase protein EC=2.7...   157   6e-37
E7PJJ9.1 E7PJJ9_PSESG Chemotaxis sensor histidine kinase CheA         122   2e-26
Q48ND4.1 Q48ND4_PSE14 Chemotaxis sensor histidine kinase CheA         122   2e-26
C3K1Q2.1 C3K1Q2_PSEFS Putative chemotaxis two-component system, ...   122   2e-26
E7P0H1.1 E7P0H1_PSESG Chemotaxis sensor histidine kinase CheA         121   4e-26

>D8IYI1.1 D8IYI1_HERSS Chemotaxis histidine kinase protein EC=2.7.3.-
          Length = 725

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 78/103 (75%), Positives = 88/103 (85%)

Query: 1   MKKDAARDALVQEARELLVAMEAALLQIESDGASRDAINAIFRAAHTIKGSAGLFAFDSI 60
           M KD+AR A+VQEARELLVAMEAALLQ E +G SRD+I+AIFRAAHTIKGSAGLFAFDSI
Sbjct: 1   MSKDSARHAMVQEARELLVAMEAALLQTEMEGPSRDSIHAIFRAAHTIKGSAGLFAFDSI 60

Query: 61  VSFTHLLENVLEKVRNGIVKLDDGMMSLLLNCGDYMGELVDAI 103
           V FTH LE+VLE+VR   + LD  +MSLLL C DY+GELVDAI
Sbjct: 61  VQFTHHLEHVLERVREERLALDSHLMSLLLQCSDYIGELVDAI 103


>E7PJJ9.1 E7PJJ9_PSESG Chemotaxis sensor histidine kinase CheA
          Length = 706

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 80/107 (74%)

Query: 4   DAARDALVQEARELLVAMEAALLQIESDGASRDAINAIFRAAHTIKGSAGLFAFDSIVSF 63
           D A+   + EARELL AME +LLQ+ES+   +DAI A+FRAAHTIKGSAGLF    IVSF
Sbjct: 6   DQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THLLENVLEKVRNGIVKLDDGMMSLLLNCGDYMGELVDAIAXCGDYM 110
           TH++E+VL+++R G V +D G++++LL  GD+M EL+D +A  G  +
Sbjct: 66  THIVEDVLDRLREGSVSVDAGLIAVLLRSGDHMLELIDVVASRGQTL 112


>Q48ND4.1 Q48ND4_PSE14 Chemotaxis sensor histidine kinase CheA
          Length = 700

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 80/107 (74%)

Query: 4   DAARDALVQEARELLVAMEAALLQIESDGASRDAINAIFRAAHTIKGSAGLFAFDSIVSF 63
           D A+   + EARELL AME +LLQ+ES+   +DAI A+FRAAHTIKGSAGLF    IVSF
Sbjct: 6   DQAQQTFIVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THLLENVLEKVRNGIVKLDDGMMSLLLNCGDYMGELVDAIAXCGDYM 110
           TH++E+VL+++R G V +D G++++LL  GD+M EL+D +A  G  +
Sbjct: 66  THIVEDVLDRLREGSVSVDAGLIAVLLKSGDHMLELIDVVASRGQTL 112


>C3K1Q2.1 C3K1Q2_PSEFS Putative chemotaxis two-component system, sensor
           histidine kinase protein EC=2.7.3.-
          Length = 679

 Score =  122 bits (305), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 80/105 (76%)

Query: 4   DAARDALVQEARELLVAMEAALLQIESDGASRDAINAIFRAAHTIKGSAGLFAFDSIVSF 63
           D A    + EARELL AME +LLQ+ES+   +DAI AIFRAAHTIKGSAGLF   SIV F
Sbjct: 6   DQALQTFIVEARELLHAMEQSLLQLESEPGDQDAIGAIFRAAHTIKGSAGLFGLASIVGF 65

Query: 64  THLLENVLEKVRNGIVKLDDGMMSLLLNCGDYMGELVDAIAXCGD 108
           TH++E+VL+++R+G V +D  +++LLL CGD+M EL+D +A  G+
Sbjct: 66  THIVEDVLDRLRDGSVAVDAALIALLLKCGDHMLELIDVVASRGE 110


>E7P0H1.1 E7P0H1_PSESG Chemotaxis sensor histidine kinase CheA
          Length = 706

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/107 (54%), Positives = 80/107 (74%)

Query: 4   DAARDALVQEARELLVAMEAALLQIESDGASRDAINAIFRAAHTIKGSAGLFAFDSIVSF 63
           D A+   + EARELL AME +LLQ+ES+   +DAI A+FRAAHTIKGSAGLF    IVSF
Sbjct: 6   DQAQQTFLVEARELLQAMEESLLQLESEPGDQDAIGAVFRAAHTIKGSAGLFGLTPIVSF 65

Query: 64  THLLENVLEKVRNGIVKLDDGMMSLLLNCGDYMGELVDAIAXCGDYM 110
           TH++E+VL+++R G V +D G++++LL  GD+M EL+D +A  G  +
Sbjct: 66  THIVEDVLDRLREGSVSVDAGLIAVLLKSGDHMLELIDVVASRGQTL 112