BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0171.p         (185 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYI3.1 D8IYI3_HERSS Positive regulator of CheA protein activit...   225   2e-57
Q7NZB0.1 Q7NZB0_CHRVO Signal transduction chemotaxis protein          181   3e-44
D5CS84.1 D5CS84_SIDLE CheW protein                                    180   8e-44
C7RJ91.1 C7RJ91_ACCPU CheW protein                                    179   2e-43
C7RJ93.1 C7RJ93_ACCPU CheW protein                                    178   3e-43

>D8IYI3.1 D8IYI3_HERSS Positive regulator of CheA protein activity protein
          Length = 194

 Score =  225 bits (574), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 152/183 (83%), Gaps = 1/183 (0%)

Query: 1   MPSLSLNGELSFARTQYQESVQSRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPS 60
           MPS+SLNGE    R Q +E V+SRQFLTF++G E FAMPI  IREIIEFS LTEVPLMP+
Sbjct: 1   MPSVSLNGESKRRRAQ-EEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPA 59

Query: 61  FLRGVINLRGAVVPVIDLSVRFGRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVL 120
           FLRGVINLRG+VVPVIDLSVRFGRA T VAKRTCI+IMEL Q++Q LLLGVMVDAV AVL
Sbjct: 60  FLRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVL 119

Query: 121 TVEDEKIEPPLSFGARLRADFIEGMINIKDRFVVVLDVKAVLSVDELSTLIGVAAVEELS 180
           ++  ++IEP  SFGA +RADF++ MIN+ +RF+VVLDV  VLSVDEL++L+G++A + L 
Sbjct: 120 SIGVDQIEPRPSFGAGIRADFVDAMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALG 179

Query: 181 VPP 183
             P
Sbjct: 180 GGP 182


>Q7NZB0.1 Q7NZB0_CHRVO Signal transduction chemotaxis protein
          Length = 181

 Score =  181 bits (460), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 92/155 (59%), Positives = 117/155 (75%)

Query: 24  RQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRFG 83
           RQFLTF L  E FA+ I  IREI+E+   T VPLMP F+RGV+NLRGAVVPVIDLS+RFG
Sbjct: 23  RQFLTFQLAGETFAIGILRIREILEYIKPTSVPLMPPFIRGVMNLRGAVVPVIDLSLRFG 82

Query: 84  RAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFIE 143
           R +TA+ +RTCIVI+E+  ++Q  L+GV+VD V  VL + D +IEPP  FG+++R DFI 
Sbjct: 83  RDETAINRRTCIVIIEVEHDEQWQLIGVLVDTVHEVLAIPDSEIEPPPQFGSKIRVDFIS 142

Query: 144 GMINIKDRFVVVLDVKAVLSVDELSTLIGVAAVEE 178
           GM  I +RFVV+LDV  VLSV E+S L G++  EE
Sbjct: 143 GMARIDNRFVVMLDVDKVLSVGEMSLLSGLSRQEE 177


>D5CS84.1 D5CS84_SIDLE CheW protein
          Length = 179

 Score =  180 bits (457), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/151 (58%), Positives = 115/151 (76%)

Query: 24  RQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRFG 83
           +QFLTF LG EMFA+    ++EIIE+  LTEVP+MP F+RGVINLRGAVVPV+DLSVRFG
Sbjct: 20  QQFLTFTLGSEMFAVGTLSVKEIIEYGQLTEVPMMPGFIRGVINLRGAVVPVLDLSVRFG 79

Query: 84  RAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFIE 143
           R  T V +RTCIVI+E+    +   +GV+VDAV  VL +   +IEPP +FGA++R DFI+
Sbjct: 80  RGATQVTRRTCIVIIEVPTGDEKHDIGVLVDAVSEVLEIPASEIEPPPAFGAKIRTDFIQ 139

Query: 144 GMINIKDRFVVVLDVKAVLSVDELSTLIGVA 174
           GM  +  RFV++LDV  VLSVDE+++L  V+
Sbjct: 140 GMGKVDGRFVILLDVGKVLSVDEIASLAAVS 170


>C7RJ91.1 C7RJ91_ACCPU CheW protein
          Length = 195

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/157 (54%), Positives = 122/157 (77%)

Query: 24  RQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRFG 83
           +Q+LTF+LG EMFA+ I +++EIIE+ +LTE+P+MP F+RGVINLRG+VVPVIDL+ RFG
Sbjct: 36  QQYLTFLLGGEMFAVAILNVKEIIEYGNLTEIPMMPPFIRGVINLRGSVVPVIDLAARFG 95

Query: 84  RAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFIE 143
            A++ + KR+CIVI+E+ +      +G+MVDAV  V+ +   +IEPP SFGAR+RADFI+
Sbjct: 96  GAESQIGKRSCIVILEVSEGDFRHDIGIMVDAVSEVIEIPGSEIEPPPSFGARIRADFIQ 155

Query: 144 GMINIKDRFVVVLDVKAVLSVDELSTLIGVAAVEELS 180
           GM  +  RFV++L++  VLSVDE++ L  VA+ E  S
Sbjct: 156 GMGKVAGRFVIILNIVRVLSVDEIALLAQVASAETSS 192


>C7RJ93.1 C7RJ93_ACCPU CheW protein
          Length = 193

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 84/151 (55%), Positives = 120/151 (79%)

Query: 24  RQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRFG 83
           +Q+LTF+LG EMFA+ I +++EIIE+ +LTE+P+MP F+RGVINLRG+VVPVIDL+ RFG
Sbjct: 36  QQYLTFLLGGEMFAVAILNVKEIIEYGNLTEIPMMPPFIRGVINLRGSVVPVIDLAARFG 95

Query: 84  RAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFIE 143
            A++ + KR+CIVI+E+ +      +G+MVDAV  V+ +   +IEPP SFGAR+RADFI+
Sbjct: 96  GAESQIGKRSCIVILEVSEGDFRHDIGIMVDAVSEVIEIPGSEIEPPPSFGARIRADFIQ 155

Query: 144 GMINIKDRFVVVLDVKAVLSVDELSTLIGVA 174
           GM  +  RFV++L++  VLSVDE++TL  +A
Sbjct: 156 GMGKVAGRFVIILNIVRVLSVDEIATLAALA 186