BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0164.p         (73 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T217.1 A6T217_JANMA Poly(A) polymerase EC=2.7.7.19                   92   2e-17
F1W3V2.1 F1W3V2_9BURK Poly(A) polymerase                               90   1e-16
A4G8C2.1 A4G8C2_HERAR Poly(A) polymerase EC=2.7.7.19                   89   3e-16
D8IYI8.1 D8IYI8_HERSS tRNA nucleotidyltransferase/poly(A) polyme...    87   1e-15
Q2SYY8.1 Q2SYY8_BURTA PolyA polymerase                                 77   1e-12

>A6T217.1 A6T217_JANMA Poly(A) polymerase EC=2.7.7.19
          Length = 455

 Score = 92.0 bits (227), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 55/68 (80%), Gaps = 1/68 (1%)

Query: 1  MIKKFIRSFLG-KKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGG 59
          MIKK IR  LG K+K  DTT+P VL+ K+H ID +LVS NA+RVT TLQQAGFKAF+VGG
Sbjct: 1  MIKKLIRRILGTKQKTGDTTQPVVLTAKEHRIDPKLVSANAVRVTSTLQQAGFKAFLVGG 60

Query: 60 AVRDLLXG 67
          AVRDLL G
Sbjct: 61 AVRDLLLG 68


>F1W3V2.1 F1W3V2_9BURK Poly(A) polymerase
          Length = 455

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 53/68 (77%), Gaps = 1/68 (1%)

Query: 1  MIKKFIRSFLGKK-KELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGG 59
          MI KF R  LG K K +D + P +LS K+HGID +LVS NAIRVTQ LQQAGFKAF+VGG
Sbjct: 1  MITKFFRRILGSKSKPIDRSIPVMLSAKEHGIDPKLVSSNAIRVTQGLQQAGFKAFLVGG 60

Query: 60 AVRDLLXG 67
          AVRDLL G
Sbjct: 61 AVRDLLLG 68


>A4G8C2.1 A4G8C2_HERAR Poly(A) polymerase EC=2.7.7.19
          Length = 453

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%), Gaps = 1/68 (1%)

Query: 1  MIKKFIRSFLG-KKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGG 59
          MIKKFIR  LG K+K  D T+P  L+ ++H ID +LVS NAIRVT TLQ+AGFKAF+VGG
Sbjct: 1  MIKKFIRRILGTKQKTGDHTQPVTLTAQEHRIDPKLVSANAIRVTSTLQEAGFKAFLVGG 60

Query: 60 AVRDLLXG 67
          AVRDLL G
Sbjct: 61 AVRDLLLG 68


>D8IYI8.1 D8IYI8_HERSS tRNA nucleotidyltransferase/poly(A) polymerase
          protein EC=2.7.7.19
          Length = 534

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 48/89 (53%), Positives = 53/89 (59%), Gaps = 22/89 (24%)

Query: 1  MIKKFIRSFLGKKKELDTT----------------------EPTVLSQKQHGIDLQLVSP 38
          MIKK IRS LG+ K                           EP VL  K+HGID  LVSP
Sbjct: 1  MIKKLIRSILGRGKTAAAAASAEPPAPARKTRAKAGADGKIEPDVLGPKEHGIDPSLVSP 60

Query: 39 NAIRVTQTLQQAGFKAFIVGGAVRDLLXG 67
          NA+RVTQTLQ+AG+KAFIVGGAVRDLL G
Sbjct: 61 NAVRVTQTLQEAGYKAFIVGGAVRDLLLG 89


>Q2SYY8.1 Q2SYY8_BURTA PolyA polymerase
          Length = 514

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 44/61 (72%)

Query: 7  RSFLGKKKELDTTEPTVLSQKQHGIDLQLVSPNAIRVTQTLQQAGFKAFIVGGAVRDLLX 66
          +S  G  K+    EPT++    HGID  L+S NAIRVT TLQQAGF+AFIVGGAVRDLL 
Sbjct: 39 KSARGAAKKTRNGEPTIVHANAHGIDPALISKNAIRVTDTLQQAGFRAFIVGGAVRDLLL 98

Query: 67 G 67
          G
Sbjct: 99 G 99