BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0162.p (239 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IYJ0.1 D8IYJ0_HERSS DnaA regulatory inactivator Hda protein 291 7e-77 A6T215.1 A6T215_JANMA Uncharacterized conserved protein 280 1e-73 A4G8C0.1 A4G8C0_HERAR Putative uncharacterized protein 278 3e-73 F1W3V0.1 F1W3V0_9BURK Putative regulatory factor 267 1e-69 C3XBB0.1 C3XBB0_OXAFO Putative uncharacterized protein 249 3e-64 >D8IYJ0.1 D8IYJ0_HERSS DnaA regulatory inactivator Hda protein Length = 238 Score = 291 bits (744), Expect = 7e-77, Method: Compositional matrix adjust. Identities = 153/240 (63%), Positives = 182/240 (75%), Gaps = 11/240 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIA-AGQAQPT-----LNDRFIYLWGET 54 M+Q+ LDLSA QP +FD+FVTG+NAELL+RL+ +A AG Q T DRF+YLW E Sbjct: 1 MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60 Query: 55 GAGKTHLLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPAS 114 GAGKTHLL ++ +A G Q +RLI AD+ D+AFDY P I YLLDD +QL Sbjct: 61 GAGKTHLLQALATRVAQEGRQ-----ARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQ 115 Query: 115 QIAAFALFNQIRELGGYLVSAGAQPPAQLEVREDLRTRLGWGLIYQLHGLTDDEKIAALT 174 QIAAF LFNQIRE GG++V +G PP +LE+REDLRTRLGWGLIYQ+H L+DDEKIAAL Sbjct: 116 QIAAFNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALL 175 Query: 175 QSAQARGMTISPGILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQEA 234 Q RG+ I P ++ Y+LTHYRRDMPSLSRMLDALDRYSL TKR ITLPLLR+LLQQE+ Sbjct: 176 QITLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 235 >A6T215.1 A6T215_JANMA Uncharacterized conserved protein Length = 223 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/233 (62%), Positives = 176/233 (75%), Gaps = 11/233 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 MRQLLLDL A++P T D+FV G NAEL Q LQ +AAGQ L++RF+YLWGE GAGKTH Sbjct: 1 MRQLLLDLPAEKPQTLDSFVVGTNAELAQLLQRLAAGQPN-GLDERFVYLWGEAGAGKTH 59 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFA 120 LL ++ + +R + +DA F YD A YLLDD +L P +QIAAFA Sbjct: 60 LLRAMAET----------PHARYLDSDAGTDDFLYDSATTLYLLDDSHKLTPDAQIAAFA 109 Query: 121 LFNQIRELGGYLVSAGAQPPAQLEVREDLRTRLGWGLIYQLHGLTDDEKIAALTQSAQAR 180 LFNQ+RE GG L++AG PA L VREDLRTR GWGLIYQ+HGL+DDEKIAALT +A AR Sbjct: 110 LFNQVREQGGCLLAAGNAAPASLTVREDLRTRFGWGLIYQVHGLSDDEKIAALTHAAGAR 169 Query: 181 GMTISPGILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQE 233 G+T+SPG+L YL+TH+ RDM SLS MLDALD+YSLETKRPITLPLLR+LLQ++ Sbjct: 170 GLTLSPGVLPYLITHFARDMRSLSAMLDALDQYSLETKRPITLPLLRELLQRQ 222 >A4G8C0.1 A4G8C0_HERAR Putative uncharacterized protein Length = 227 Score = 278 bits (712), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 145/235 (61%), Positives = 173/235 (73%), Gaps = 11/235 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 MRQLLLDL A++P T +FV G NAEL+ LQ +A GQ L++RF+YLWG GAGKTH Sbjct: 1 MRQLLLDLPAEKPQTLTSFVVGANAELIHLLQRLAQGQPG-GLDERFVYLWGGAGAGKTH 59 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFA 120 LL ++ A + IP DA AF Y PA YLLDD +L P +QIAAFA Sbjct: 60 LLRAL----------ASADTTLYIPGDAGADAFAYQPATTLYLLDDSHKLSPEAQIAAFA 109 Query: 121 LFNQIRELGGYLVSAGAQPPAQLEVREDLRTRLGWGLIYQLHGLTDDEKIAALTQSAQAR 180 LFNQ+RE GG L++AG PA L VREDLRTR GWGLIYQ+HGL+D+EKIAALT +A+AR Sbjct: 110 LFNQVREQGGCLLAAGNAAPATLTVREDLRTRFGWGLIYQVHGLSDEEKIAALTHAAEAR 169 Query: 181 GMTISPGILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQEAE 235 G+ +SPG+L YLL+H+ RDM SLS MLDALD YSLETKRPITLPLLR+LLQ+E E Sbjct: 170 GLMLSPGVLPYLLSHFARDMRSLSAMLDALDEYSLETKRPITLPLLRELLQRENE 224 >F1W3V0.1 F1W3V0_9BURK Putative regulatory factor Length = 227 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 137/234 (58%), Positives = 171/234 (73%), Gaps = 11/234 (4%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 MRQ+LLDL ++P D F G+N ELL L A G P L+ RF+Y WGE GAGK+H Sbjct: 1 MRQMLLDLPGEKPQNLDNFEPGRNTELLALLSQHAYGDKLP-LSARFVYCWGEAGAGKSH 59 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFA 120 LLH++ +RLI D+ +AF + P I YLLDDC++L QIAAF Sbjct: 60 LLHAL----------NTTASTRLIGPDSPAAAFIHSPDIGLYLLDDCDRLSDELQIAAFG 109 Query: 121 LFNQIRELGGYLVSAGAQPPAQLEVREDLRTRLGWGLIYQLHGLTDDEKIAALTQSAQAR 180 LFNQIRE GG L+S+GA PPA+L++REDLRTRLGWGLIY++HGLTDDEKIAALT +A+ R Sbjct: 110 LFNQIREYGGALISSGALPPARLDLREDLRTRLGWGLIYEVHGLTDDEKIAALTLAARTR 169 Query: 181 GMTISPGILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQEA 234 G ++ G+L YL+TH+RRDM SLS MLD LD+YSLETKRP+TLPLLR+LLQ+E+ Sbjct: 170 GFALATGVLPYLITHFRRDMRSLSAMLDELDQYSLETKRPVTLPLLRELLQRES 223 >C3XBB0.1 C3XBB0_OXAFO Putative uncharacterized protein Length = 224 Score = 249 bits (635), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 125/235 (53%), Positives = 166/235 (70%), Gaps = 14/235 (5%) Query: 1 MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIAAGQAQPTLNDRFIYLWGETGAGKTH 60 M+QLLL+L P+ DT++TGQN E++ L++IA T + F+YLWG+ GKTH Sbjct: 1 MQQLLLNLDTGNAPSLDTYLTGQNGEVVHLLREIAYR----TSREHFVYLWGDNATGKTH 56 Query: 61 LLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPASQIAAFA 120 LL + L +PA R IP+DA ++ F Y P YLLDDCE+L QIAAF Sbjct: 57 LLKA-LSQFSPA---------RYIPSDAPETDFSYSPQCNLYLLDDCERLDSQKQIAAFN 106 Query: 121 LFNQIRELGGYLVSAGAQPPAQLEVREDLRTRLGWGLIYQLHGLTDDEKIAALTQSAQAR 180 LFNQ+RE GY++++G P L++R+DL++RL WGL+YQ+ L+D+EK+AAL + A+ R Sbjct: 107 LFNQVRENNGYMITSGPCTPLALDLRDDLKSRLCWGLVYQIKSLSDEEKMAALNEQARQR 166 Query: 181 GMTISPGILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQEAE 235 G TISPG+L YL+THY+RDM SLS +LDALDRYSL+TKR ITLPLL DLLQQ+ E Sbjct: 167 GFTISPGVLPYLITHYQRDMHSLSMILDALDRYSLQTKRTITLPLLHDLLQQKQE 221