BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0141.p         (39 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8N4D4.1 D8N4D4_RALSO Putative two component response regulator ...    72   4e-11
Q8XUM6.1 Q8XUM6_RALSO Probable two component response regulator ...    71   6e-11
B5SK95.1 B5SK95_RALSO Two component response regulator protein         71   6e-11
A3S0L1.1 A3S0L1_RALSO Transcriptional regulatory protein               71   6e-11
D8NLH3.1 D8NLH3_RALSO Putative two component response regulator ...    70   8e-11

>D8N4D4.1 D8N4D4_RALSO Putative two component response regulator
           transcription regulator protein
          Length = 234

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 36/39 (92%)

Query: 1   MQLSPFTVRTFVRRIYSKLKVTSKTEAIYEARTLGLLPD 39
           M+LS FTVRTFVRRIYSKLKVTSK EAIYEARTLGLL D
Sbjct: 196 MELSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLDD 234


>Q8XUM6.1 Q8XUM6_RALSO Probable two component response regulator
           transcription regulator protein
          Length = 231

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 1   MQLSPFTVRTFVRRIYSKLKVTSKTEAIYEARTLGLLPD 39
           M LS FTVRTFVRRIYSKLKVTSK EAIYEARTLGLL D
Sbjct: 193 MALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLSD 231


>B5SK95.1 B5SK95_RALSO Two component response regulator protein
          Length = 232

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 1   MQLSPFTVRTFVRRIYSKLKVTSKTEAIYEARTLGLLPD 39
           M LS FTVRTFVRRIYSKLKVTSK EAIYEARTLGLL D
Sbjct: 194 MALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLAD 232


>A3S0L1.1 A3S0L1_RALSO Transcriptional regulatory protein
          Length = 232

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 1   MQLSPFTVRTFVRRIYSKLKVTSKTEAIYEARTLGLLPD 39
           M LS FTVRTFVRRIYSKLKVTSK EAIYEARTLGLL D
Sbjct: 194 MALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLAD 232


>D8NLH3.1 D8NLH3_RALSO Putative two component response regulator
           transcription regulator protein
          Length = 232

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 35/39 (89%)

Query: 1   MQLSPFTVRTFVRRIYSKLKVTSKTEAIYEARTLGLLPD 39
           M LS FTVRTFVRRIYSKLKVTSK EAIYEARTLGLL D
Sbjct: 194 MALSHFTVRTFVRRIYSKLKVTSKAEAIYEARTLGLLAD 232