BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0140.p (526 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6SVB2.1 A6SVB2_JANMA Two component sensor histidine kinase EC=2... 749 0.0 B5RXA1.1 B5RXA1_RALSO Two component sensor histidine kinase prot... 681 0.0 B5SK94.1 B5SK94_RALSO Two component sensor histidine kinase prot... 681 0.0 A3S0L0.1 A3S0L0_RALSO Sensor protein uhpB EC=2.7.3.- 681 0.0 D8N217.1 D8N217_RALSO Putative two component sensor histidine ki... 680 0.0 >A6SVB2.1 A6SVB2_JANMA Two component sensor histidine kinase EC=2.7.3.- Length = 643 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/532 (68%), Positives = 429/532 (80%), Gaps = 32/532 (6%) Query: 17 PAAPLALYASRIKTDGTVAVYLNGRLVHRAQQRGQLWNSLFTPLWILPDQAADGAPLKEI 76 P+ L LY RIKT+GT+A+Y NGRL+HRAQ G LWNSLFTPL + DQ + APL+EI Sbjct: 113 PSESLMLYGVRIKTEGTIALYANGRLIHRAQAHGPLWNSLFTPLLVTLDQGNNDAPLREI 172 Query: 77 LIRVEHAPETPVGLSTLWLGPAEVLQGRYYLRQWLQRELPATLSAAFMVVGIFALFVWFR 136 L+R++H ET VG+S+LWLG A L+GRYY RQWLQRELPATLSAAF+ VGIFALFVWFR Sbjct: 173 LLRIQHPAETRVGMSSLWLGTAGALKGRYYERQWLQRELPATLSAAFLAVGIFALFVWFR 232 Query: 137 RRHETGYLLFFNLAAVSFVGHLHYYVSLPIVVDWFAWLTANALFWLLTVIHLFLCQLHGR 196 R E YLLFFNLAA+SFVGHLHYYV LPI DWFAWLT+NALFWL+ ++HLFLCQLHGR Sbjct: 233 RGQEIAYLLFFNLAAISFVGHLHYYVDLPITKDWFAWLTSNALFWLIAIVHLFLCQLHGR 292 Query: 197 PLRRLTRAIVGITLTISILSLPVLGVLPVFPSTSLLVPLAYAIAVLMGVTVSVAGGVCSW 256 L LTR I+ + + IS L+L G+LP +PSTS+LVP+ Y +AV++GV VS+ G V SW Sbjct: 293 ALPWLTRFIIALVVAISALTLA--GILPFYPSTSILVPIIYGVAVILGVVVSITGAVYSW 350 Query: 257 KRSREGLLLTLGVGVSTLLGMSDWLLHNNVVSPEGWFLGAYTNAVTFAMFGTLMYRRYVN 316 KRSR+G+L+ +G V+TLLGMSDWLL++N ++PEGWFLGAYTNAVTFAMFGTLMYRRYV+ Sbjct: 351 KRSRDGVLVAIGTAVATLLGMSDWLLYSNFINPEGWFLGAYTNAVTFAMFGTLMYRRYVS 410 Query: 317 AIAEVELVNAGLAQRLEAREHELGQTHRRLREAALRQTISDERQRLMQDMHDGLGSTLIS 376 AI EVE NA LA+RL+ RE EL +HR+LREAALRQTISDERQRLMQDMHDGLGS+LIS Sbjct: 411 AIDEVEQANANLAKRLQIRETELEISHRQLREAALRQTISDERQRLMQDMHDGLGSSLIS 470 Query: 377 AIRSVEHGGVSDVKVSQILKDCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTDI 436 AIRSVEHGGVSD K+SQILKDCLDDLKLTIDSMEP+EADL+LLLATLRFRLEPRLEGT I Sbjct: 471 AIRSVEHGGVSDFKISQILKDCLDDLKLTIDSMEPIEADLVLLLATLRFRLEPRLEGTGI 530 Query: 437 ALVWEVQELPTLDWLEPSSALHILRIVQESIANILRHTRADRIRVATAHA---------- 486 L+WEVQ+LPTLDWL+PSSALHILRIVQES+ANILRHTRAD+IRV+T+ Sbjct: 531 TLLWEVQDLPTLDWLDPSSALHILRIVQESVANILRHTRADQIRVSTSRDEDGVSVSIED 590 Query: 487 --------------------NQRRRAQALDGAVTWLSAASGTRFTLWLPLAR 518 NQ+RRA A++G V+W S GT+F LWLPLAR Sbjct: 591 NGRGFDIDKALAGVAGRGLHNQQRRAMAVNGKVSWESGPDGTKFVLWLPLAR 642 >B5RXA1.1 B5RXA1_RALSO Two component sensor histidine kinase protein EC=2.7.3.- Length = 643 Score = 681 bits (1758), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/531 (66%), Positives = 408/531 (76%), Gaps = 33/531 (6%) Query: 18 AAPLALYASRIKTDGTVAVYLNGRLVHRAQQRGQLWNSLFTPLWILPDQAADGAPLKEIL 77 + PLALY R+KTDGT+AVY +G L HRAQQ+G LWNS TPLW++ +Q ADGAPL+E+L Sbjct: 114 SGPLALYGVRVKTDGTIAVYADGELAHRAQQQGPLWNSTRTPLWVVLEQRADGAPLREVL 173 Query: 78 IRVEHAPETPVGLSTLWLGPAEVLQGRYYLRQWLQRELPATLSAAFMVVGIFALFVWFRR 137 IR+EH T V LS+LW+GP E L+GRY++RQWLQ+ELP LSAAF+ VGIFALFVWF+R Sbjct: 174 IRLEHTERTQVALSSLWVGPVETLRGRYHVRQWLQQELPRMLSAAFLAVGIFALFVWFKR 233 Query: 138 RHETGYLLFFNLAAVSFVGHLHYYVSLPIVVDWFAWLTANALFWLLTVIHLFLCQLHGRP 197 R ETGYLLFFNLA SF+ LH+Y SLPI DWFAWLT N+L WL+TV+H FLCQLHGR Sbjct: 234 RRETGYLLFFNLAVTSFLRGLHFYASLPIANDWFAWLTVNSLLWLVTVVHFFLCQLHGRK 293 Query: 198 LRRLTRAIVGITLTISILSLPVLGVLPVFPSTSLLVPLAYAIAVLMGVTVSVAGGVCSWK 257 L TRA+VG+T I IL+LP L VLP P + PL Y +A LMG V + GG+ +W+ Sbjct: 294 LTWFTRALVGVTGLIGILTLPGLAVLPNTPKVT---PLIYPMAALMGAAVGLVGGISAWR 350 Query: 258 RSREGLLLTLGVGVSTLLGMSDWLLHNNVVSPEGWFLGAYTNAVTFAMFGTLMYRRYVNA 317 RS EG+L+ +GVGV TLLG+SDWLL NN VSPEGW+ GAYTNA+TF +FG LM RRYVNA Sbjct: 351 RSNEGVLVAIGVGVCTLLGVSDWLLQNNFVSPEGWYFGAYTNAITFGIFGILMCRRYVNA 410 Query: 318 IAEVELVNAGLAQRLEAREHELGQTHRRLREAALRQTISDERQRLMQDMHDGLGSTLISA 377 I EVEL NA LAQRL+ RE EL ++H+RL E +QTIS ERQRLMQDMHDGLG++LISA Sbjct: 411 INEVELANANLAQRLKQREAELERSHQRLLEVERQQTISAERQRLMQDMHDGLGASLISA 470 Query: 378 IRSVEHGGVSDVKVSQILKDCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTDIA 437 IRSVE G VS+ KVSQILK CLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGT IA Sbjct: 471 IRSVERGAVSEAKVSQILKSCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTGIA 530 Query: 438 LVWEVQELPTLDWLEPSSALHILRIVQESIANILRHTRADRIRVATAHA----------- 486 L+WE+Q+LPTL WL+PSSALHILRIVQESIANIL HT+A IRV TA Sbjct: 531 LLWEIQKLPTLTWLDPSSALHILRIVQESIANILHHTQATEIRVGTATESTGVRVTIVDN 590 Query: 487 -------------------NQRRRAQALDGAVTWLSAASGTRFTLWLPLAR 518 NQ+RRAQA+DG V W+S +GTRFTLWLPL R Sbjct: 591 GQGFDLEKTLAAGKGNGLRNQQRRAQAIDGKVNWVSGPAGTRFTLWLPLER 641 >B5SK94.1 B5SK94_RALSO Two component sensor histidine kinase protein EC=2.7.3.- Length = 643 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/531 (66%), Positives = 408/531 (76%), Gaps = 33/531 (6%) Query: 18 AAPLALYASRIKTDGTVAVYLNGRLVHRAQQRGQLWNSLFTPLWILPDQAADGAPLKEIL 77 + PLALY R+KTDGT+AVY +G LVHRAQQ+G LWNS TPLW++ +Q ADGAPL EIL Sbjct: 114 SGPLALYGVRVKTDGTIAVYADGELVHRAQQQGPLWNSTRTPLWVVLEQRADGAPLHEIL 173 Query: 78 IRVEHAPETPVGLSTLWLGPAEVLQGRYYLRQWLQRELPATLSAAFMVVGIFALFVWFRR 137 IR+EH T V LS+LW+GP E L+GRY++RQWLQ+ELP LSAAF+ VGIFALFVWF+R Sbjct: 174 IRLEHTERTQVALSSLWVGPVETLRGRYHVRQWLQQELPRMLSAAFLAVGIFALFVWFKR 233 Query: 138 RHETGYLLFFNLAAVSFVGHLHYYVSLPIVVDWFAWLTANALFWLLTVIHLFLCQLHGRP 197 R ETGYLLFFNLA SF+ LH+Y SLPI DWFAWLT N+L WL+TV+H FLCQLHGR Sbjct: 234 RRETGYLLFFNLAVTSFLRGLHFYASLPIANDWFAWLTVNSLLWLVTVVHFFLCQLHGRK 293 Query: 198 LRRLTRAIVGITLTISILSLPVLGVLPVFPSTSLLVPLAYAIAVLMGVTVSVAGGVCSWK 257 L TRA+VG+T I IL+LP L VLP P + PL Y +A LMG V + GG+ +W+ Sbjct: 294 LTWFTRALVGVTGLIGILTLPGLAVLPNTPKVT---PLIYPMAALMGAAVGLVGGISAWR 350 Query: 258 RSREGLLLTLGVGVSTLLGMSDWLLHNNVVSPEGWFLGAYTNAVTFAMFGTLMYRRYVNA 317 RS EG+L+ +GVGV TLLG+SDWLL NN VSPEGW+ GAYTNA+TF +FG LM RRYVNA Sbjct: 351 RSNEGVLVAIGVGVCTLLGVSDWLLQNNFVSPEGWYFGAYTNAITFGIFGILMCRRYVNA 410 Query: 318 IAEVELVNAGLAQRLEAREHELGQTHRRLREAALRQTISDERQRLMQDMHDGLGSTLISA 377 I EVEL NA LAQRL+ RE EL ++H+RL E +QTIS ERQRLMQDMHDGLG++LISA Sbjct: 411 INEVELANANLAQRLKQREAELERSHQRLLEVERQQTISAERQRLMQDMHDGLGASLISA 470 Query: 378 IRSVEHGGVSDVKVSQILKDCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTDIA 437 IRSVE G VS+ KVSQILK CLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGT IA Sbjct: 471 IRSVERGAVSEAKVSQILKSCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTGIA 530 Query: 438 LVWEVQELPTLDWLEPSSALHILRIVQESIANILRHTRADRIRVATAHA----------- 486 L+WE+Q+LPTL WL+PSSALHILRIVQESIANIL HT+A IR+ TA Sbjct: 531 LLWEIQKLPTLTWLDPSSALHILRIVQESIANILHHTQATEIRLGTATESTGVRVTIVDN 590 Query: 487 -------------------NQRRRAQALDGAVTWLSAASGTRFTLWLPLAR 518 NQ+RRAQA+DG V W+S +GTRFTLWLPL R Sbjct: 591 GQGFDLEKTLAAGKGNGLRNQQRRAQAIDGKVNWVSGPAGTRFTLWLPLER 641 >A3S0L0.1 A3S0L0_RALSO Sensor protein uhpB EC=2.7.3.- Length = 643 Score = 681 bits (1757), Expect = 0.0, Method: Compositional matrix adjust. Identities = 352/531 (66%), Positives = 408/531 (76%), Gaps = 33/531 (6%) Query: 18 AAPLALYASRIKTDGTVAVYLNGRLVHRAQQRGQLWNSLFTPLWILPDQAADGAPLKEIL 77 + PLALY R+KTDGT+AVY +G LVHRAQQ+G LWNS TPLW++ +Q ADGAPL EIL Sbjct: 114 SGPLALYGVRVKTDGTIAVYADGELVHRAQQQGPLWNSTRTPLWVVLEQRADGAPLHEIL 173 Query: 78 IRVEHAPETPVGLSTLWLGPAEVLQGRYYLRQWLQRELPATLSAAFMVVGIFALFVWFRR 137 IR+EH T V LS+LW+GP E L+GRY++RQWLQ+ELP LSAAF+ VGIFALFVWF+R Sbjct: 174 IRLEHTERTQVALSSLWVGPVETLRGRYHVRQWLQQELPRMLSAAFLAVGIFALFVWFKR 233 Query: 138 RHETGYLLFFNLAAVSFVGHLHYYVSLPIVVDWFAWLTANALFWLLTVIHLFLCQLHGRP 197 R ETGYLLFFNLA SF+ LH+Y SLPI DWFAWLT N+L WL+TV+H FLCQLHGR Sbjct: 234 RRETGYLLFFNLAVTSFLRGLHFYASLPIANDWFAWLTVNSLLWLVTVVHFFLCQLHGRK 293 Query: 198 LRRLTRAIVGITLTISILSLPVLGVLPVFPSTSLLVPLAYAIAVLMGVTVSVAGGVCSWK 257 L TRA+VG+T I IL+LP L VLP P + PL Y +A LMG V + GG+ +W+ Sbjct: 294 LTWFTRALVGVTGLIGILTLPGLAVLPNTPKVT---PLIYPMAALMGAAVGLVGGISAWR 350 Query: 258 RSREGLLLTLGVGVSTLLGMSDWLLHNNVVSPEGWFLGAYTNAVTFAMFGTLMYRRYVNA 317 RS EG+L+ +GVGV TLLG+SDWLL NN VSPEGW+ GAYTNA+TF +FG LM RRYVNA Sbjct: 351 RSNEGVLVAIGVGVCTLLGVSDWLLQNNFVSPEGWYFGAYTNAITFGIFGILMCRRYVNA 410 Query: 318 IAEVELVNAGLAQRLEAREHELGQTHRRLREAALRQTISDERQRLMQDMHDGLGSTLISA 377 I EVEL NA LAQRL+ RE EL ++H+RL E +QTIS ERQRLMQDMHDGLG++LISA Sbjct: 411 INEVELANANLAQRLKQREAELERSHQRLLEVERQQTISAERQRLMQDMHDGLGASLISA 470 Query: 378 IRSVEHGGVSDVKVSQILKDCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTDIA 437 IRSVE G VS+ KVSQILK CLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGT IA Sbjct: 471 IRSVERGAVSEAKVSQILKSCLDDLKLTIDSMEPVEADLLLLLATLRFRLEPRLEGTGIA 530 Query: 438 LVWEVQELPTLDWLEPSSALHILRIVQESIANILRHTRADRIRVATAHA----------- 486 L+WE+Q+LPTL WL+PSSALHILRIVQESIANIL HT+A IR+ TA Sbjct: 531 LLWEIQKLPTLTWLDPSSALHILRIVQESIANILHHTQATEIRLGTATESTGVRVTIVDN 590 Query: 487 -------------------NQRRRAQALDGAVTWLSAASGTRFTLWLPLAR 518 NQ+RRAQA+DG V W+S +GTRFTLWLPL R Sbjct: 591 GQGFDLEKTLAAGKGNGLRNQQRRAQAIDGKVNWVSGPAGTRFTLWLPLER 641 >D8N217.1 D8N217_RALSO Putative two component sensor histidine kinase transcription regulator protein EC=2.7.3.- Length = 626 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/544 (65%), Positives = 413/544 (75%), Gaps = 37/544 (6%) Query: 5 LAGRPIPADADTPAAPLALYASRIKTDGTVAVYLNGRLVHRAQQRGQLWNSLFTPLWILP 64 L+ P+P + PLALY R+KTDGT+AVY+NG LVHRAQQ+G LWNS TPLW++ Sbjct: 88 LSAPPLPPHS----GPLALYGIRVKTDGTIAVYVNGELVHRAQQQGPLWNSTRTPLWVVL 143 Query: 65 DQAADGAPLKEILIRVEHAPETPVGLSTLWLGPAEVLQGRYYLRQWLQRELPATLSAAFM 124 ++ D AP++EILIR+EH T V LS+LWLGP E L+GRY++RQWLQ+ELP LSAAF+ Sbjct: 144 ERRVDDAPVREILIRLEHTERTQVALSSLWLGPVETLRGRYHVRQWLQQELPRMLSAAFL 203 Query: 125 VVGIFALFVWFRRRHETGYLLFFNLAAVSFVGHLHYYVSLPIVVDWFAWLTANALFWLLT 184 VGIFALFVWF+RR ETGYLLFFNLAA SF+ H+Y LPI DWFAWLT N+L WL+T Sbjct: 204 AVGIFALFVWFKRRRETGYLLFFNLAATSFLRGQHFYAGLPIANDWFAWLTVNSLLWLVT 263 Query: 185 VIHLFLCQLHGRPLRRLTRAIVGITLTISILSLPVLGVLPVFPSTSLLVPLAYAIAVLMG 244 V+H FLCQLHGR L TRA+VG T I +L+LP L VLP P + PL Y +A LMG Sbjct: 264 VVHFFLCQLHGRTLTWFTRALVGATGLIGVLTLPGLAVLPNTPKVT---PLIYPMAALMG 320 Query: 245 VTVSVAGGVCSWKRSREGLLLTLGVGVSTLLGMSDWLLHNNVVSPEGWFLGAYTNAVTFA 304 V + GG+ +W+RS EG+L+ +GVGV TLLG+SDWLL NN VSPEGW+ GAY NA+TF Sbjct: 321 AAVGLVGGINAWRRSNEGVLVAIGVGVCTLLGVSDWLLQNNFVSPEGWYFGAYANAITFG 380 Query: 305 MFGTLMYRRYVNAIAEVELVNAGLAQRLEAREHELGQTHRRLREAALRQTISDERQRLMQ 364 +FG LMYRRYVNAI+EVE NA LAQRL+ RE EL ++H+RLREA +QTIS ERQRLMQ Sbjct: 381 IFGILMYRRYVNAISEVEQANANLAQRLKQREAELERSHQRLREAERQQTISAERQRLMQ 440 Query: 365 DMHDGLGSTLISAIRSVEHGGVSDVKVSQILKDCLDDLKLTIDSMEPVEADLLLLLATLR 424 DMHDGLG++LISAIRSVE G VSD KVSQILK CLDDLKLTIDSMEPVEADLLLLLATLR Sbjct: 441 DMHDGLGASLISAIRSVERGTVSDAKVSQILKGCLDDLKLTIDSMEPVEADLLLLLATLR 500 Query: 425 FRLEPRLEGTDIALVWEVQELPTLDWLEPSSALHILRIVQESIANILRHTRADRIRVATA 484 FRLEPRLEGT IAL+WEVQ+LPTL WL+PSSALHILRIVQESIANIL HT+A IRV TA Sbjct: 501 FRLEPRLEGTGIALLWEVQKLPTLTWLDPSSALHILRIVQESIANILHHTQASEIRVGTA 560 Query: 485 HA------------------------------NQRRRAQALDGAVTWLSAASGTRFTLWL 514 NQ+RRAQA+DG V+W+S GTRFTLWL Sbjct: 561 VEPTGVRVTIVDNGRGFDVEKTLAAGKGNGLRNQQRRAQAIDGTVSWVSGPEGTRFTLWL 620 Query: 515 PLAR 518 PL R Sbjct: 621 PLER 624