BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0111.p         (156 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYL5.1 D8IYL5_HERSS Regulatory protein recX                         185   2e-45
O86082.2 RECX_HERSE Regulatory protein recX                           185   2e-45
A4G8B2.1 RECX_HERAR Regulatory protein recX                           149   2e-34
A6T203.1 RECX_JANMA Regulatory protein recX                           142   2e-32
D8NYA7.1 D8NYA7_RALSO Regulatory protein recX 5                       133   1e-29

>D8IYL5.1 D8IYL5_HERSS Regulatory protein recX
          Length = 154

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 99/122 (81%)

Query: 1   MPRPQISLKARALKYLSSREHSRLELARKLTPYAQDGDDIEALLNWLQESKFLSQERFSE 60
           MPRP ISLKARALKYLSSREHSRLELARKL PYAQ+GDDIEALL WL++S+FLSQERFSE
Sbjct: 1   MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60

Query: 61  SLVNRRVGRYGNNRILSELKSHGITGEALGDAKIGLTQGENERAREVLRRKFDEAPADGM 120
           SLV+RR  RYGN RILSEL  HGI GEA+ D K  L  GE ERA +VLRRKF   PAD  
Sbjct: 61  SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120

Query: 121 AR 122
            R
Sbjct: 121 TR 122


>O86082.2 RECX_HERSE Regulatory protein recX
          Length = 154

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 99/122 (81%)

Query: 1   MPRPQISLKARALKYLSSREHSRLELARKLTPYAQDGDDIEALLNWLQESKFLSQERFSE 60
           MPRP ISLKARALKYLSSREHSRLELARKL PYAQ+GDDIEALL WL++S+FLSQERFSE
Sbjct: 1   MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60

Query: 61  SLVNRRVGRYGNNRILSELKSHGITGEALGDAKIGLTQGENERAREVLRRKFDEAPADGM 120
           SLV+RR  RYGN RILSEL  HGI GEA+ D K  L  GE ERA +VLRRKF   PAD  
Sbjct: 61  SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120

Query: 121 AR 122
            R
Sbjct: 121 TR 122


>A4G8B2.1 RECX_HERAR Regulatory protein recX
          Length = 151

 Score =  149 bits (375), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/122 (62%), Positives = 92/122 (75%)

Query: 1   MPRPQISLKARALKYLSSREHSRLELARKLTPYAQDGDDIEALLNWLQESKFLSQERFSE 60
           M + Q+SLKARAL+YLS+REHSR ELARKL  YAQ+GDDIEALL+ L+ + F+S+ RFSE
Sbjct: 1   MAKLQVSLKARALRYLSAREHSRQELARKLARYAQEGDDIEALLDTLEAANFMSEARFSE 60

Query: 61  SLVNRRVGRYGNNRILSELKSHGITGEALGDAKIGLTQGENERAREVLRRKFDEAPADGM 120
           SLVNRR  R+GN+RILSELKSH I  ++L + K  L Q E  RAREV  RKF  A +D  
Sbjct: 61  SLVNRRAARFGNSRILSELKSHNIDPDSLTEIKAALAQDEVARAREVWTRKFGVAASDAN 120

Query: 121 AR 122
            R
Sbjct: 121 GR 122


>A6T203.1 RECX_JANMA Regulatory protein recX
          Length = 151

 Score =  142 bits (357), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 72/112 (64%), Positives = 87/112 (77%)

Query: 1   MPRPQISLKARALKYLSSREHSRLELARKLTPYAQDGDDIEALLNWLQESKFLSQERFSE 60
           M + Q+SLKARAL+YLS+REHSR EL RKL  +AQ+GDD+EALL+ L+ +KFLSQ RFSE
Sbjct: 1   MAKLQVSLKARALRYLSAREHSRQELGRKLARHAQEGDDVEALLDTLEAAKFLSQSRFSE 60

Query: 61  SLVNRRVGRYGNNRILSELKSHGITGEALGDAKIGLTQGENERAREVLRRKF 112
           SLV+RR  R+GN+RILSELKSHGI  ++L D K  L   E  RAR V  RKF
Sbjct: 61  SLVHRRAARFGNSRILSELKSHGIDPDSLTDIKANLESDEFARARAVWERKF 112


>D8NYA7.1 D8NYA7_RALSO Regulatory protein recX 5
          Length = 159

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 68/124 (54%), Positives = 87/124 (70%), Gaps = 1/124 (0%)

Query: 1   MPRPQISLKARALKYLSSREHSRLELARKLTPYAQDGDDIEALLNWLQESKFLSQERFSE 60
           +PR  +SLKARAL YLS REHSR EL RKL P+A+  D++EALL+WL+   +LS  RF+E
Sbjct: 3   LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVEALLDWLEGENWLSNARFAE 62

Query: 61  SLVNRRVGRYGNNRILSELKSHGITGEALGDAKIGLTQGENERAREVLRRKFDEAPADGM 120
           S+V+RR GRYG  R++ ELK+H +  EALG+ K  L   E  RA+ V  R+F   PAD M
Sbjct: 63  SVVHRRAGRYGTARLMQELKTHELGDEALGEVKAQLQASETARAKAVWERRFGRPPAD-M 121

Query: 121 ARRA 124
           A RA
Sbjct: 122 AERA 125