BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0110.p (388 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q13UH9.1 SUCC_BURXL Succinyl-CoA ligase [ADP-forming] subunit be... 683 0.0 D5NAH5.1 D5NAH5_9BURK Succinyl-CoA ligase [ADP-forming] subunit ... 683 0.0 D5WCJ9.1 D5WCJ9_BURSC Succinyl-CoA ligase [ADP-forming] subunit ... 678 0.0 F1VZ46.1 F1VZ46_9BURK Succinyl-CoA ligase (ADP-forming) beta chain 677 0.0 D8IYL6.1 D8IYL6_HERSS Succinyl-CoA ligase [ADP-forming] subunit ... 677 0.0 >Q13UH9.1 SUCC_BURXL Succinyl-CoA ligase [ADP-forming] subunit beta EC=6.2.1.5 Length = 389 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/388 (89%), Positives = 370/388 (95%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR+FGV VPRG P SV+DAVKAAE LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSLEQVREYANQILGMQLITHQTGPEGQKVRRLLIEEGADIKKELYVSMVTDRVSQR 120 KVAKSLEQVREYANQILGMQL+THQTGPEGQKV RLLIEEGADIKKELYV +V DRVSQ+ Sbjct: 61 KVAKSLEQVREYANQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAESHPELIHQIAIDPSTGLTDADADSIATKIGVPAASVVDARKQ 180 +V+MASSEGGMD+EEVAE PELIH+IA+DP+TGL DA+AD +ATKIGVPAAS+ AR Sbjct: 121 IVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAI 180 Query: 181 LQGLYKAYWDTDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKA+W+TDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEEIGKKL 360 AFKIMLKNP L AILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNE++GKK+ Sbjct: 301 AFKIMLKNPNLTAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAANGK 388 LA+SGLPII+ADSMEEAAQKVVAAA+GK Sbjct: 361 LAESGLPIIAADSMEEAAQKVVAAASGK 388 >D5NAH5.1 D5NAH5_9BURK Succinyl-CoA ligase [ADP-forming] subunit beta EC=6.2.1.5 Length = 389 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/388 (89%), Positives = 370/388 (95%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR+FGV VPRG P SV+DAVKAAE LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSLEQVREYANQILGMQLITHQTGPEGQKVRRLLIEEGADIKKELYVSMVTDRVSQR 120 KVAKSLEQVREY+NQILGMQL+THQTGPEGQKV RLLIEEGADIKKELYV +V DRVSQ+ Sbjct: 61 KVAKSLEQVREYSNQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAESHPELIHQIAIDPSTGLTDADADSIATKIGVPAASVVDARKQ 180 +V+MASSEGGMD+EEVAE PELIH+IA+DP+TGL DA+AD +ATKIGVPAAS+ AR Sbjct: 121 IVVMASSEGGMDVEEVAEKTPELIHKIAVDPATGLKDAEADELATKIGVPAASLPQARAI 180 Query: 181 LQGLYKAYWDTDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKA+W+TDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEEIGKKL 360 AFKIMLKNP L AILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNE++GKK+ Sbjct: 301 AFKIMLKNPNLTAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAANGK 388 LA+SGLPII+ADSMEEAAQKVVAAA+GK Sbjct: 361 LAESGLPIIAADSMEEAAQKVVAAASGK 388 >D5WCJ9.1 D5WCJ9_BURSC Succinyl-CoA ligase [ADP-forming] subunit beta EC=6.2.1.5 Length = 389 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/388 (88%), Positives = 368/388 (94%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR+FGV VPRG P SV+DAVKAAE LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKFGVAVPRGKPVFSVDDAVKAAEELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSLEQVREYANQILGMQLITHQTGPEGQKVRRLLIEEGADIKKELYVSMVTDRVSQR 120 KVAKSLEQVREY+NQILGMQL+THQTGPEGQKV RLLIEEGADIKKELYV +V DRVSQ+ Sbjct: 61 KVAKSLEQVREYSNQILGMQLVTHQTGPEGQKVNRLLIEEGADIKKELYVGLVIDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAESHPELIHQIAIDPSTGLTDADADSIATKIGVPAASVVDARKQ 180 +V+MASSEGGMD+EEVAE PELIH++A+DPSTGL D++AD +A KIGVP AS+ AR Sbjct: 121 IVVMASSEGGMDVEEVAEKTPELIHKVAVDPSTGLKDSEADDLAKKIGVPDASIPQARAI 180 Query: 181 LQGLYKAYWDTDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKA+W+TDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAFWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AE+EASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEIEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEEIGKKL 360 AFKIMLKNP L AILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNE++GKK+ Sbjct: 301 AFKIMLKNPNLTAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAANGK 388 LA+SGLPIISADSMEEAAQKVVAAA+GK Sbjct: 361 LAESGLPIISADSMEEAAQKVVAAASGK 388 >F1VZ46.1 F1VZ46_9BURK Succinyl-CoA ligase (ADP-forming) beta chain Length = 388 Score = 677 bits (1748), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/386 (88%), Positives = 367/386 (95%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILR++GVT PRGIPC +VEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRKYGVTTPRGIPCNTVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSLEQVREYANQILGMQLITHQTGPEGQKVRRLLIEEGADIKKELYVSMVTDRVSQR 120 KVAK+LEQVREYA ILGMQL+THQT PEGQ+VRRLLIEEGADI KELYVS+VTDRV+QR Sbjct: 61 KVAKTLEQVREYATAILGMQLVTHQTSPEGQQVRRLLIEEGADIAKELYVSLVTDRVTQR 120 Query: 121 VVLMASSEGGMDIEEVAESHPELIHQIAIDPSTGLTDADADSIATKIGVPAASVVDARKQ 180 VVLMASSEGGMDIEEVAESHPEL+H IAIDP+ GLTDA+AD IA KIGVPAAS+VDAR Q Sbjct: 121 VVLMASSEGGMDIEEVAESHPELLHHIAIDPAVGLTDAEADGIAAKIGVPAASIVDARTQ 180 Query: 181 LQGLYKAYWDTDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKAYW+TDA+LAEINPLILTG GKVIALDAKFNFD+NAL+R PEIVAYRDLDEED Sbjct: 181 LQGLYKAYWETDAALAEINPLILTGSGKVIALDAKFNFDANALYRQPEIVAYRDLDEEDA 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AEVEASKFDLAYISLDG+IGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGAT EKVTE Sbjct: 241 AEVEASKFDLAYISLDGDIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATAEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEEIGKKL 360 AFKIMLKNP LKAILVNIFGGIM+CDVIAEGVI ASKAVSL VPLVVRMKGTNE++GKK+ Sbjct: 301 AFKIMLKNPGLKAILVNIFGGIMKCDVIAEGVIVASKAVSLTVPLVVRMKGTNEDLGKKM 360 Query: 361 LADSGLPIISADSMEEAAQKVVAAAN 386 LA+SGLPII+AD+ME+AA++VVAAA Sbjct: 361 LAESGLPIIAADTMEDAARQVVAAAK 386 >D8IYL6.1 D8IYL6_HERSS Succinyl-CoA ligase [ADP-forming] subunit beta EC=6.2.1.5 Length = 386 Score = 677 bits (1746), Expect = 0.0, Method: Compositional matrix adjust. Identities = 343/376 (91%), Positives = 359/376 (95%) Query: 1 MKIHEYQGKEILRQFGVTVPRGIPCQSVEDAVKAAETLGGPVWVVKAQIHAGGRGKGGGV 60 MKIHEYQGKEILRQFGVTVPRGIPC SV++ AA+ LGGPVWVVKAQIHAGGRGKGGGV Sbjct: 1 MKIHEYQGKEILRQFGVTVPRGIPCMSVDEVEAAAKELGGPVWVVKAQIHAGGRGKGGGV 60 Query: 61 KVAKSLEQVREYANQILGMQLITHQTGPEGQKVRRLLIEEGADIKKELYVSMVTDRVSQR 120 KVAKS+EQV+EYANQI+GMQL+THQTGPEGQKVRRLLIEEGADIKKELYVS+VTDRVSQ+ Sbjct: 61 KVAKSIEQVKEYANQIMGMQLVTHQTGPEGQKVRRLLIEEGADIKKELYVSLVTDRVSQK 120 Query: 121 VVLMASSEGGMDIEEVAESHPELIHQIAIDPSTGLTDADADSIATKIGVPAASVVDARKQ 180 VVLMASSEGGMDIEEVA S+PE IH + IDP GLTDA AD +A KIGVPAAS+ ARK Sbjct: 121 VVLMASSEGGMDIEEVAHSNPEKIHNVIIDPVDGLTDAQADDVAAKIGVPAASIPAARKN 180 Query: 181 LQGLYKAYWDTDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 LQGLYKAYW+TDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP Sbjct: 181 LQGLYKAYWETDASLAEINPLILTGDGKVIALDAKFNFDSNALFRHPEIVAYRDLDEEDP 240 Query: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE Sbjct: 241 AEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATTEKVTE 300 Query: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEEIGKKL 360 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNE++GKKL Sbjct: 301 AFKIMLKNPELKAILVNIFGGIMRCDVIAEGVIAASKAVSLKVPLVVRMKGTNEDLGKKL 360 Query: 361 LADSGLPIISADSMEE 376 LADSGLPIISADSMEE Sbjct: 361 LADSGLPIISADSMEE 376