BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0088.p (338 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZ75.1 D8IZ75_HERSS Translation factor (SUA5) protein 486 e-135 A4G890.1 A4G890_HERAR Putative uncharacterized protein 441 e-122 A6T1Y5.1 A6T1Y5_JANMA Uncharacterized conserved protein, putativ... 433 e-119 C3XAE2.1 C3XAE2_OXAFO Translation factor SUA5 431 e-118 F1W0P1.1 F1W0P1_9BURK Sua5 YciO YrdC YwlC family protein 418 e-115 >D8IZ75.1 D8IZ75_HERSS Translation factor (SUA5) protein Length = 347 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 254/327 (77%), Positives = 283/327 (86%), Gaps = 2/327 (0%) Query: 12 AARKLEAGKLVAFPTETVYGLGGDAENAAAIADIYAAKGRPANHPVIVHVAPEADISYWA 71 AAR LE G LVAFPTETVYGLGGDAEN AAIA IYAAKGRPANHPVIVHV+PEADI YWA Sbjct: 19 AARTLERGGLVAFPTETVYGLGGDAENPAAIAAIYAAKGRPANHPVIVHVSPEADIGYWA 78 Query: 72 ADVPPQARALIDAFWPGPLTLILKRAAHVPAAASGGQDSIGVRCPSHPVAQALLREFKGG 131 A VP +AR LI +FWPGPLTLILKRAAH+P A +GGQDS+GVRCP+HPVAQALLREF+GG Sbjct: 79 ASVPVEARRLIASFWPGPLTLILKRAAHIPDAVAGGQDSVGVRCPAHPVAQALLREFRGG 138 Query: 132 KGGVAGPSANKFGHVSPTTAQHVREEFG-EADSLLDYVLDGGQSEVGIESTIVDLSRVET 190 KGG+AGPSANKFGHVSPTTA+HVREEFG +A SL+DYVLDGGQSEVGIESTIVDLSR++T Sbjct: 139 KGGIAGPSANKFGHVSPTTAEHVREEFGSDAGSLVDYVLDGGQSEVGIESTIVDLSRIDT 198 Query: 191 HGAVLLRPGQISVDQIAAVLGVAPRAPDAAAPRASGTLDAHYAPHTPVAQVAPEQLAGVL 250 HG VLLRPGQIS ++I AVLGV PDA+APRASGTLDAHYAPHTPV QVAPE+LA VL Sbjct: 199 HGPVLLRPGQISAERIEAVLGVPLATPDASAPRASGTLDAHYAPHTPVVQVAPEELATVL 258 Query: 251 QQLAAGGYKVALIYRTA-AMPVHASAAMSTDADRYAHGLYAALRDMDHKGADVIVVESLP 309 ++LAA G KVALI R + V + AM AD YAH LYAALRDMDH GAD+IVVE+LP Sbjct: 259 EKLAALGKKVALIARLQRSGLVSVTRAMPDTADAYAHDLYAALRDMDHTGADLIVVEALP 318 Query: 310 QTAEWQGINDRLRRAAFDSTGILSRLL 336 + +WQG+NDRLRRAAFDS G+L+RL Sbjct: 319 LSGQWQGVNDRLRRAAFDSQGLLARLF 345 >A4G890.1 A4G890_HERAR Putative uncharacterized protein Length = 339 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 232/337 (68%), Positives = 262/337 (77%), Gaps = 6/337 (1%) Query: 3 TIDMDAVRLAARKLEAGKLVAFPTETVYGLGGDAENAAAIADIYAAKGRPANHPVIVHVA 62 ++D+ A+ AAR+LE G+LVAFPTETVYGLG DAEN A+A IY AKGRP+NHPVIVH+A Sbjct: 4 SLDLTAIADAARRLERGELVAFPTETVYGLGADAENPLAVAKIYQAKGRPSNHPVIVHLA 63 Query: 63 PEADISYWAADVPPQARALIDAFWPGPLTLILKRAAHVPAAASGGQDSIGVRCPSHPVAQ 122 PEADI+YWA DV P+AR LI AFWPGPLTLILKRA H+P +GGQDSIG+RCPSHPVAQ Sbjct: 64 PEADIAYWAKDVSPEARQLIAAFWPGPLTLILKRANHIPDTVAGGQDSIGLRCPSHPVAQ 123 Query: 123 ALLREFKGGKGGVAGPSANKFGHVSPTTAQHVREEF-GEADSLLDYVLDGGQSEVGIEST 181 ALLR FK GKGG+A PSANKFGHVSPTTAQHVR+EF + + LL VLDGGQSEVGIEST Sbjct: 124 ALLRNFKQGKGGIAAPSANKFGHVSPTTAQHVRDEFVDDTNGLLTCVLDGGQSEVGIEST 183 Query: 182 IVDLSRVETHGAVLLRPGQISVDQIAAVLGVAPRAPDAAAPRASGTLDAHYAPHTPVAQV 241 IVD+SR AVLLRPG IS QI AVLGVAP PDAAAPRASGTL+AHYAPHTPV + Sbjct: 184 IVDMSRGR---AVLLRPGHISAAQIGAVLGVAPLLPDAAAPRASGTLEAHYAPHTPVVLL 240 Query: 242 APEQLAGVLQQLAAGGYKVALIYR--TAAMPVHASAAMSTDADRYAHGLYAALRDMDHKG 299 EQ+ LQQL A G +VAL++ TA +P AS + YAH LYAALR MD Sbjct: 241 EREQMHEALQQLHAHGKRVALMHHSFTATVPAAASIFLPAQPALYAHDLYAALRAMDDAH 300 Query: 300 ADVIVVESLPQTAEWQGINDRLRRAAFDSTGILSRLL 336 ADVI+VES P W G+NDRLRRAA DS+GIL LL Sbjct: 301 ADVIMVESPPGDEAWNGVNDRLRRAAHDSSGILLTLL 337 >A6T1Y5.1 A6T1Y5_JANMA Uncharacterized conserved protein, putative translation factor Length = 340 Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/337 (68%), Positives = 261/337 (77%), Gaps = 6/337 (1%) Query: 3 TIDMDAVRLAARKLEAGKLVAFPTETVYGLGGDAENAAAIADIYAAKGRPANHPVIVHVA 62 ++D A+R AAR+LE G+LVAFPTETVYGLG DAEN AA+A+IYAAKGRP+NHPVIVH+A Sbjct: 5 SLDWPAIRDAARRLEQGELVAFPTETVYGLGADAENPAAVANIYAAKGRPSNHPVIVHLA 64 Query: 63 PEADISYWAADVPPQARALIDAFWPGPLTLILKRAAHVPAAASGGQDSIGVRCPSHPVAQ 122 PEAD++YWA V P A+ LI FWPGPLTLILKRA H+P A SGGQDSIG+RCPSHPVAQ Sbjct: 65 PEADLNYWAQSVSPDAQKLIAVFWPGPLTLILKRAVHIPDAVSGGQDSIGLRCPSHPVAQ 124 Query: 123 ALLREFKGGKGGVAGPSANKFGHVSPTTAQHVREEF-GEADSLLDYVLDGGQSEVGIEST 181 ALLR FK GKGGVA PSANKFGHVSPTTAQHV EF G+A SLL +LDGGQSEVGIEST Sbjct: 125 ALLRAFKDGKGGVAAPSANKFGHVSPTTAQHVHNEFGGDAGSLLTCILDGGQSEVGIEST 184 Query: 182 IVDLSRVETHGAVLLRPGQISVDQIAAVLGVAPRAPDAAAPRASGTLDAHYAPHTPVAQV 241 IVD+SR AVLLRPG IS +QIAAV+G P +PD AAPRASGTL++HYAP TPV V Sbjct: 185 IVDMSRGH---AVLLRPGHISAEQIAAVIGYLPASPDQAAPRASGTLESHYAPLTPVVLV 241 Query: 242 APEQLAGVLQQLAAGGYKVALI-YRTAAMP-VHASAAMSTDADRYAHGLYAALRDMDHKG 299 E L VLQ+L G + AL+ Y AMP V AS ++ YAH LYAALR MD Sbjct: 242 DGEHLLAVLQKLNLRGRRAALMQYAVDAMPLVAASISLPDTPIAYAHDLYAALRAMDDVH 301 Query: 300 ADVIVVESLPQTAEWQGINDRLRRAAFDSTGILSRLL 336 ADVIVV++ P W G+NDRLRRAA DS GIL RLL Sbjct: 302 ADVIVVQTPPTDVAWSGVNDRLRRAAHDSAGILQRLL 338 >C3XAE2.1 C3XAE2_OXAFO Translation factor SUA5 Length = 342 Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust. Identities = 215/335 (64%), Positives = 260/335 (77%), Gaps = 6/335 (1%) Query: 7 DAVRLAARKLEAGKLVAFPTETVYGLGGDAENAAAIADIYAAKGRPANHPVIVHVAPEAD 66 D VR AAR LE+G+LVAFPTETVYGLG DAENA A A I+A K RPANHP+IVHVAP+AD Sbjct: 7 DDVRAAARMLESGQLVAFPTETVYGLGADAENAVATAAIFALKNRPANHPLIVHVAPDAD 66 Query: 67 ISYWAADVPPQARALIDAFWPGPLTLILKRAAHVPAAASGGQDSIGVRCPSHPVAQALLR 126 I YW++ +P +A+ LIDAFWPGPLTLILK+AAH+PAA +GGQDSIG+RCPSHPVAQALLR Sbjct: 67 IGYWSSYIPDEAKKLIDAFWPGPLTLILKKAAHIPAAVAGGQDSIGLRCPSHPVAQALLR 126 Query: 127 EFKGGKGGVAGPSANKFGHVSPTTAQHVREEFGEADSLLDYVLDGGQSEVGIESTIVDLS 186 FKGGKGG+AGPSAN+FGHVSPT A+HVREEFG+ D L +L+GGQSEVGIESTI+DLS Sbjct: 127 AFKGGKGGIAGPSANRFGHVSPTRAEHVREEFGD-DPRLAAILEGGQSEVGIESTILDLS 185 Query: 187 RVETHGAVLLRPGQISVDQIAAVLGVAPRAPDAAAPRASGTLDAHYAPHTPVAQVAPEQL 246 R+ET G VLLRPG+I QIA V+G P PDAAAPRASGTL +HYAP TPV V + L Sbjct: 186 RIETAGPVLLRPGKIHSLQIAEVIGRMPEMPDAAAPRASGTLASHYAPLTPVVIVPEKDL 245 Query: 247 AGVLQQLAAGGYKVALIYRTA-----AMPVHASAAMSTDADRYAHGLYAALRDMDHKGAD 301 VL+QL +VAL++ ++ P+ + D Y+H LYA+LR++D AD Sbjct: 246 TSVLKQLEKKNIRVALLHYSSLSSDRKQPLVKQTGLFCSPDVYSHQLYASLRELDRHRAD 305 Query: 302 VIVVESLPQTAEWQGINDRLRRAAFDSTGILSRLL 336 VI+VE+ P T W+G+NDRLRRAA++ GIL + L Sbjct: 306 VILVEATPDTEAWKGVNDRLRRAAYNGQGILEKWL 340 >F1W0P1.1 F1W0P1_9BURK Sua5 YciO YrdC YwlC family protein Length = 333 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 230/333 (69%), Positives = 270/333 (81%), Gaps = 6/333 (1%) Query: 5 DMDAVRLAARKLEAGKLVAFPTETVYGLGGDAENAAAIADIYAAKGRPANHPVIVHVAPE 64 D D +R AA LE G+LVAFPTETVYGLG DAEN AAIA IYAAKGRP+NHPVIVH+APE Sbjct: 6 DDDILR-AAGLLEQGRLVAFPTETVYGLGADAENPAAIARIYAAKGRPSNHPVIVHLAPE 64 Query: 65 ADISYWAADVPPQARALIDAFWPGPLTLILKRAAHVPAAASGGQDSIGVRCPSHPVAQAL 124 AD YW + +P +A+ALIDAFWPGPLTLIL RAAH+PAA +GGQ+SIGVRCPSHPVAQAL Sbjct: 65 ADPGYWVSAIPNEAQALIDAFWPGPLTLILPRAAHIPAAVAGGQNSIGVRCPSHPVAQAL 124 Query: 125 LREFKGGKGGVAGPSANKFGHVSPTTAQHVREEFGEADSLLDYVLDGGQSEVGIESTIVD 184 LR FKGGKGG+A PSANKFGHVSPT AQHVR+EF D +D +LDGGQSEVGIES+I+D Sbjct: 125 LRAFKGGKGGIAAPSANKFGHVSPTIAQHVRDEF--TDGSVDLILDGGQSEVGIESSIID 182 Query: 185 LSRVETHGAVLLRPGQISVDQIAAVLGVAPRAPDAAAPRASGTLDAHYAPHTPVAQVAPE 244 LSR+++HG VLLRPG+I+ Q+A VLGVAP APDAAAPRASGTL+AHYAP TPVA +A Sbjct: 183 LSRLDSHGPVLLRPGRITALQLAQVLGVAPAAPDAAAPRASGTLEAHYAPRTPVAMIASA 242 Query: 245 QLAGVLQQLAAGGYKVALIYRTAAMPVHASA-AMSTDADRYAHGLYAALRDMDHKGADVI 303 L +LQQLAA G +VAL++ + + HA A + + YAHGLYA LR +D AD+I Sbjct: 243 DLPQILQQLAAAGRRVALLHWSDSQ--HAGALQLPSSPAGYAHGLYAGLRLLDMADADLI 300 Query: 304 VVESLPQTAEWQGINDRLRRAAFDSTGILSRLL 336 ++E+ P +A+WQ INDRLRRAA DS GIL RLL Sbjct: 301 LIEAPPGSADWQAINDRLRRAAHDSAGILERLL 333