BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0065.p (410 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C6BDP8.1 C6BDP8_RALP1 NAD(P) transhydrogenase subunit beta EC=1.... 707 0.0 Q46P68.1 Q46P68_CUPPJ NAD(P) transhydrogenase subunit beta EC=1.... 705 0.0 D8IZ98.1 D8IZ98_HERSS NAD(P) transhydrogenase subunit beta EC=1.... 702 0.0 Q46MG3.1 Q46MG3_CUPPJ NAD(P) transhydrogenase subunit beta EC=1.... 702 0.0 F1W160.1 F1W160_9BURK NAD(P) transhydrogenase subunit beta 690 0.0 >C6BDP8.1 C6BDP8_RALP1 NAD(P) transhydrogenase subunit beta EC=1.6.1.2 Length = 486 Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/410 (89%), Positives = 383/410 (93%), Gaps = 3/410 (0%) Query: 4 GVVVGGGIGAYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGE-AI 62 G+VVGGGIGAY+A++VEMTKMPELVAAMHSLIGLAAVCIA AAVAEP AF I G+ + Sbjct: 77 GLVVGGGIGAYVARTVEMTKMPELVAAMHSLIGLAAVCIATAAVAEPSAFGITVAGDNVL 136 Query: 63 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMI 122 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPV F+GQHMLNLLLAVAM+ Sbjct: 137 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVQFAGQHMLNLLLAVAML 196 Query: 123 GFGVIFVLTQNWLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 182 GFG++F L+Q+WLPFIIM AIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL Sbjct: 197 GFGILFFLSQSWLPFIIMTAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 256 Query: 183 NNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQA-QRNVKS 241 NN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFG + +A AA GG QR VKS Sbjct: 257 NNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSEASAGAAAGGSGQQRPVKS 316 Query: 242 GSADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPG 301 GS DDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKL+ KGV VKYAIHPVAGRMPG Sbjct: 317 GSPDDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLSDKGVTVKYAIHPVAGRMPG 376 Query: 302 HMNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK-DPKSSIAGMPILE 360 HMNVLLAEAEVPYDQVFEMEDIN EFGQADVVLVLGANDVVNPAAK DPKS IAGMPILE Sbjct: 377 HMNVLLAEAEVPYDQVFEMEDINGEFGQADVVLVLGANDVVNPAAKNDPKSPIAGMPILE 436 Query: 361 AYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 AYKAKT+IVNKRSM AGYAGLDNELFYMDKTMMVFGDAKKV+EDMVK+VE Sbjct: 437 AYKAKTIIVNKRSMNAGYAGLDNELFYMDKTMMVFGDAKKVVEDMVKSVE 486 >Q46P68.1 Q46P68_CUPPJ NAD(P) transhydrogenase subunit beta EC=1.6.1.2 Length = 489 Score = 705 bits (1819), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/409 (89%), Positives = 382/409 (93%), Gaps = 2/409 (0%) Query: 4 GVVVGGGIGAYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHG-EAI 62 G+VVGGGIGAY+AK VEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP AF IA G I Sbjct: 81 GLVVGGGIGAYVAKKVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPSAFGIAPAGSHEI 140 Query: 63 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMI 122 P+GNR+ELFIG FVGAITFSGSVIAFGKL+G+YKFRLFQGAPV F+GQHMLNL LAVAM+ Sbjct: 141 PMGNRIELFIGCFVGAITFSGSVIAFGKLAGRYKFRLFQGAPVVFAGQHMLNLALAVAMV 200 Query: 123 GFGVIFVLTQNWLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 182 GFG+ F +TQ W PF++M AIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL Sbjct: 201 GFGIAFFMTQEWTPFLVMLAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 260 Query: 183 NNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSG 242 NN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFG D A+AA G Q QRNVKSG Sbjct: 261 NNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSDAGASAAGGSQVQRNVKSG 320 Query: 243 SADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGH 302 SADDA+FLMGNAETVIIVPGYGLAVARAQHALKELTEKLT KGV VKYAIHPVAGRMPGH Sbjct: 321 SADDASFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTEKGVTVKYAIHPVAGRMPGH 380 Query: 303 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK-DPKSSIAGMPILEA 361 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNP+AK DPKS IAGMPILEA Sbjct: 381 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPSAKTDPKSPIAGMPILEA 440 Query: 362 YKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 YKAKT+IVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKV+EDMVKAVE Sbjct: 441 YKAKTIIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMVKAVE 489 >D8IZ98.1 D8IZ98_HERSS NAD(P) transhydrogenase subunit beta EC=1.6.1.2 Length = 479 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 375/397 (94%), Positives = 383/397 (96%), Gaps = 1/397 (0%) Query: 14 YLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGEAIPLGNRVELFIG 73 YLA+SVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWA I+AHG+ IP+GNRVELFIG Sbjct: 84 YLARSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWALGISAHGQLIPVGNRVELFIG 143 Query: 74 TFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMIGFGVIFVLTQN 133 TFVGAITFSGSVIAFGKLSGKYKFRLFQGAPV+F+GQH LNLLLAVAMIGFG+IFVLTQN Sbjct: 144 TFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVNFAGQHFLNLLLAVAMIGFGIIFVLTQN 203 Query: 134 WLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSL 193 WLPFIIMAAIAF LGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSL Sbjct: 204 WLPFIIMAAIAFALGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSL 263 Query: 194 VGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSGSADDAAFLMGN 253 VGSSGAILSYIMCKAMNRSFFNVILGGFGGD AAAA G Q QRNVKSGSADDAAFLMGN Sbjct: 264 VGSSGAILSYIMCKAMNRSFFNVILGGFGGD-AAAAGGGAQQQRNVKSGSADDAAFLMGN 322 Query: 254 AETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLAEAEVP 313 AETVIIVPGYGLAVARAQHALKELTEKLTH GV VKYAIHPVAGRMPGHMNVLLAEAEVP Sbjct: 323 AETVIIVPGYGLAVARAQHALKELTEKLTHNGVTVKYAIHPVAGRMPGHMNVLLAEAEVP 382 Query: 314 YDQVFEMEDINSEFGQADVVLVLGANDVVNPAAKDPKSSIAGMPILEAYKAKTVIVNKRS 373 YDQVFEMEDINSEF QADVVLVLGANDVVNPAAKDPKS IAGMPILEAYKAKTVIVNKRS Sbjct: 383 YDQVFEMEDINSEFAQADVVLVLGANDVVNPAAKDPKSPIAGMPILEAYKAKTVIVNKRS 442 Query: 374 MAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 MAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAV+ Sbjct: 443 MAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVD 479 >Q46MG3.1 Q46MG3_CUPPJ NAD(P) transhydrogenase subunit beta EC=1.6.1.2 Length = 488 Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/407 (89%), Positives = 380/407 (93%), Gaps = 2/407 (0%) Query: 4 GVVVGGGIGAYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHG-EAI 62 G+VVGGGIGAY+AK VEMTKMPELVAAMHSLIGLAAVCIAVAAVAEP AF IA G I Sbjct: 81 GLVVGGGIGAYVAKKVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPSAFGIAPAGSHEI 140 Query: 63 PLGNRVELFIGTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMI 122 P+GNR+ELFIG FVGAITFSGSVIAFGKL+G+YKFRLFQGAPV F+GQHMLNL LAVAM+ Sbjct: 141 PMGNRIELFIGCFVGAITFSGSVIAFGKLAGRYKFRLFQGAPVVFAGQHMLNLALAVAMV 200 Query: 123 GFGVIFVLTQNWLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 182 GFG+ F +TQ W PF++M AIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL Sbjct: 201 GFGIAFFMTQEWTPFLVMLAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSL 260 Query: 183 NNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSG 242 NN MLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFG D A+AA G Q QRNVKSG Sbjct: 261 NNPMLIIAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGSDAGASAAGGSQVQRNVKSG 320 Query: 243 SADDAAFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGH 302 SADDA+FLMGNAETVIIVPGYGLAVARAQHALKELTEKLT KGV VKYAIHPVAGRMPGH Sbjct: 321 SADDASFLMGNAETVIIVPGYGLAVARAQHALKELTEKLTEKGVTVKYAIHPVAGRMPGH 380 Query: 303 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAK-DPKSSIAGMPILEA 361 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNP+AK DPKS IAGMPILEA Sbjct: 381 MNVLLAEAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPSAKTDPKSPIAGMPILEA 440 Query: 362 YKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKA 408 YKAKT+IVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKV+EDMVKA Sbjct: 441 YKAKTIIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMVKA 487 >F1W160.1 F1W160_9BURK NAD(P) transhydrogenase subunit beta Length = 482 Score = 690 bits (1780), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/402 (90%), Positives = 375/402 (93%), Gaps = 4/402 (0%) Query: 13 AYLAKSVEMTKMPELVAAMHSLIGLAAVCIAVAAVAEPWAFNIAAHGEAIPLGNRVELFI 72 AYLA++VEMTKMPELVAAMHSLIGLAAVCIAVAAV+EPWAFNIAAH AIP GNR+ELFI Sbjct: 81 AYLARTVEMTKMPELVAAMHSLIGLAAVCIAVAAVSEPWAFNIAAHDVAIPFGNRLELFI 140 Query: 73 GTFVGAITFSGSVIAFGKLSGKYKFRLFQGAPVSFSGQHMLNLLLAVAMIGFGVIFVLTQ 132 GTFVGAITFSGSVIAFGKLSGKYKFRLFQG PVSF GQH LNL LA+ M+GFG+IF Sbjct: 141 GTFVGAITFSGSVIAFGKLSGKYKFRLFQGQPVSFQGQHFLNLALAILMVGFGLIFCFAP 200 Query: 133 N----WLPFIIMAAIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLI 188 W F++MA IAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLI Sbjct: 201 GIEPAWTAFVLMAIIAFVLGVLIIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLI 260 Query: 189 IAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGGQAQRNVKSGSADDAA 248 IAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVG QA R VKSGSADDAA Sbjct: 261 IAGSLVGSSGAILSYIMCKAMNRSFFNVILGGFGGDPAAAAAVGSQAARPVKSGSADDAA 320 Query: 249 FLMGNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLA 308 FLM NAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLA Sbjct: 321 FLMSNAETVIIVPGYGLAVARAQHALKELTEKLTHKGVIVKYAIHPVAGRMPGHMNVLLA 380 Query: 309 EAEVPYDQVFEMEDINSEFGQADVVLVLGANDVVNPAAKDPKSSIAGMPILEAYKAKTVI 368 EAEVPYDQVFEMEDIN EF QADVVLVLGANDVVNPAAKDPKSSIAGMPILE YKAKTVI Sbjct: 381 EAEVPYDQVFEMEDINGEFAQADVVLVLGANDVVNPAAKDPKSSIAGMPILEVYKAKTVI 440 Query: 369 VNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVIEDMVKAVE 410 VNKRSMA+GYAGLDNELFYMDKTMMVFGDAKKVIE+MVKAVE Sbjct: 441 VNKRSMASGYAGLDNELFYMDKTMMVFGDAKKVIEEMVKAVE 482