BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0055.p (269 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZA7.1 D8IZA7_HERSS Ribosomal RNA small subunit methyltransfer... 414 e-114 A6SV13.1 RSMA_JANMA Ribosomal RNA small subunit methyltransferas... 404 e-111 A4G256.1 RSMA_HERAR Ribosomal RNA small subunit methyltransferas... 401 e-110 F1VWL0.1 F1VWL0_9BURK Dimethyladenosine transferase 369 e-100 C3XBE5.1 C3XBE5_OXAFO Ribosomal RNA small subunit methyltransfer... 314 7e-84 >D8IZA7.1 D8IZA7_HERSS Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 260 Score = 414 bits (1064), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/268 (77%), Positives = 230/268 (85%), Gaps = 10/268 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFLTD+ VLHDII++IAP DD MVEIGPGLAAMT LLLE L +H + Sbjct: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RL+K+FD RL VHSADALKFDF++IPVP GRKLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVERLKKRFDAARLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSKA+GRLSVMLQWRY M+L+FVVPPT Sbjct: 113 SPLLFHLAEIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPP+V+SAIVRMIP+A PL C Q+LLE+VVTKAFSQRRKVIRNCVAGL E +L Sbjct: 173 AFDPPPKVDSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQV 232 Query: 241 GIDPQARPEAVPMEQFVALANVL--RQH 266 GIDPQARPEAVPMEQFVALAN+L RQH Sbjct: 233 GIDPQARPEAVPMEQFVALANLLAARQH 260 >A6SV13.1 RSMA_JANMA Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 255 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 198/263 (75%), Positives = 224/263 (85%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFLTD +VL++II AI PQ D MVEIGPGLAAMTRLLLE + +MH + Sbjct: 1 MKHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLEGVQQMHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RL+K FDPKRL +HSADAL+FDF++IPVPAG KLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVERLKKSFDPKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSK +GRLSVMLQWRY M+LMFVVPPT Sbjct: 113 SPLLFHLAEMAPHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPPRVESAIVRMIP+A PL CDQ+ LE+VV KAFSQRRKVIRNC+AG+ E+DL+ Sbjct: 173 AFDPPPRVESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEV 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 GIDPQ RPE +P+ Q+VALAN L Sbjct: 233 GIDPQLRPETIPLAQYVALANRL 255 >A4G256.1 RSMA_HERAR Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 255 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 197/263 (74%), Positives = 223/263 (84%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFLTD VLH+II AI PQ D MVEIGPGLAAMTRLLL+ +++MH + Sbjct: 1 MKHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLDGVNQMHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RL+K FDPK+L +HSADAL+FDF++IPVPAG KLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVERLKKTFDPKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA +AP VQDQHFMLQKEVVERMVA+PGSK +GRLSVMLQWRY M+LMF+VPPT Sbjct: 113 SPLLFHLAEMAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPPRVESAIVRMIPI PL CDQ+ LE+VV KAFSQRRKVIRNC+AG+ EADLI A Sbjct: 173 AFDPPPRVESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEA 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 GI+PQ RPE + + Q+VALAN L Sbjct: 233 GINPQMRPETISLAQYVALANRL 255 >F1VWL0.1 F1VWL0_9BURK Dimethyladenosine transferase Length = 259 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/263 (70%), Positives = 212/263 (80%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKH+ARKRFGQNFLTD+ VL DII IAP + D MVEIGPGL AMTRLLL+ LD++H + Sbjct: 1 MKHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRLLLDDLDQLHVV- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV RLQK FDPK+L +HS DAL+FDF ++PVPAG+KLRVVGNLPYNIS Sbjct: 60 -----ELD--RDLVVRLQKTFDPKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHLA+ LVQDQHFMLQKEVVERMVA PG K++GRLSVMLQWRY M L F+VPPT Sbjct: 113 SPLLFHLASFTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDPPPRVESAIVRMIP+ PL C+Q LE VV KAFS RRKV+RNC+AG+ E LI A Sbjct: 173 AFDPPPRVESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDA 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 G+DP RPE + +EQ+V LAN L Sbjct: 233 GVDPTLRPETISLEQYVGLANRL 255 >C3XBE5.1 C3XBE5_OXAFO Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 256 Score = 314 bits (805), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 159/263 (60%), Positives = 194/263 (73%), Gaps = 8/263 (3%) Query: 1 MKHIARKRFGQNFLTDQSVLHDIISAIAPQKDDVMVEIGPGLAAMTRLLLESLDEMHXMT 60 MKHI RKRFGQNFL DQSVL DI+SAIAP+ D M+EIGPG+ AMT LL L +M + Sbjct: 1 MKHIPRKRFGQNFLKDQSVLDDIVSAIAPKPTDHMLEIGPGMGAMTENLLPYLSQMDVI- 59 Query: 61 RLLLESLDEMRDLVARLQKQFDPKRLHVHSADALKFDFTSIPVPAGRKLRVVGNLPYNIS 120 LD RDLV L+K+F +L +H DAL FDF +I + K R+VGNLPYNIS Sbjct: 60 -----ELD--RDLVVYLKKRFPADKLTIHQGDALSFDFRTIGASSENKWRIVGNLPYNIS 112 Query: 121 SPLMFHLAALAPLVQDQHFMLQKEVVERMVADPGSKAFGRLSVMLQWRYRMQLMFVVPPT 180 SPL+FHL + ++DQHFMLQ+EVVERMVA+PG+KA+GRLSVMLQW+Y M+L+F+VPPT Sbjct: 113 SPLLFHLMNFSSCIEDQHFMLQREVVERMVAEPGNKAYGRLSVMLQWQYDMELLFIVPPT 172 Query: 181 AFDPPPRVESAIVRMIPIAHPLDCDQSLLEEVVTKAFSQRRKVIRNCVAGLLVEADLIAA 240 AFDP PRV+SAIVRMIP P C LE+ VT+AFSQRRK++RN +A L E+ LI Sbjct: 173 AFDPMPRVDSAIVRMIPRETPEACSSVALEKTVTQAFSQRRKMLRNNLAPLFSESRLIEL 232 Query: 241 GIDPQARPEAVPMEQFVALANVL 263 GIDP RPE + +EQF+ LAN L Sbjct: 233 GIDPTRRPEDLTVEQFILLANHL 255