BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0016.p (570 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A3VWG4.1 A3VWG4_9RHOB DNA/RNA helicase 671 0.0 A1SJ00.1 A1SJ00_NOCSJ Type III restriction enzyme, res subunit 397 e-108 D3CWE9.1 D3CWE9_9ACTO Type III restriction protein res subunit 379 e-103 C7Q8S0.1 C7Q8S0_CATAD Type III restriction protein res subunit 375 e-102 A4SC93.1 A4SC93_PROVI Type III restriction enzyme, res subunit 343 4e-92 >A3VWG4.1 A3VWG4_9RHOB DNA/RNA helicase Length = 557 Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/554 (61%), Positives = 422/554 (76%), Gaps = 1/554 (0%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 FL+ +RLLRGPWQAFERDVARLL+ GF+DVR++GGSGD GADV+GVKN E+WV+QCK T Sbjct: 4 FLDDRRLLRGPWQAFERDVARLLMHAGFDDVRVVGGSGDQGADVVGVKNGEIWVVQCKHT 63 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLL 137 T P+ AV +V ++ YY A+R+ +ATSR G ++A I R+ +GI + +L+PA L Sbjct: 64 TTAPPTKQAVQEVVDSGTYYGANRMLLATSRAIGGGVEAEIARYRRIGINVELLDPARLA 123 Query: 138 EMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFR 197 +++ PEY SRR+LR YQ EAV +F L +TGR QVVLATGLGKTVV+AE +A L+R Sbjct: 124 HLSQEVPEYAKSRRELRPYQQEAVSKFREGLTDTGRAQVVLATGLGKTVVMAEVVADLYR 183 Query: 198 DEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAV 257 D I R LVLA REL+ QLQ FW QLPKW+PTH L G E PS ++GITFATVQS + Sbjct: 184 DNLIRDNRVLVLADKRELIRQLQFGFWHQLPKWVPTHMLSGDETPSFYDGITFATVQSVI 243 Query: 258 SRLDELPDFGVVMIDEAHHVGSDTFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLGPPV 317 R+D+LP FG+V+IDEAHH+GS +FRR D + M+GG TATPWRGDG+DID LLG P+ Sbjct: 244 GRIDDLPSFGLVLIDEAHHIGSTSFRRALDALEPPMVGGATATPWRGDGFDIDELLGKPL 303 Query: 318 VRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEAARA 377 VR+GI++GLR+ +L E DYRLLADNIDW FV+ S ++YS+ QLNK LL+PTRDEEAAR Sbjct: 304 VRLGISDGLRQKYLSEVDYRLLADNIDWGFVQEISSHNYSLNQLNKKLLMPTRDEEAARH 363 Query: 378 IRDTFDKEFRRSAIIFCSSVTHATSFAAMLRLFGFRAEPITGDMTSRERDRTMAAFRKGS 437 I + F E RR I+F +V HA SFA LR +G RAE I+ +RERDR MA FR+G Sbjct: 364 IVEVFGGEKRRGGIVFSPTVDHAESFAGTLRGYGLRAEAISSRQEARERDRLMAMFRRGD 423 Query: 438 LDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVLDFVSDL 497 +DV+ + DLFNEGVDVPDVD++VFMR THSRRIFVQQLGRGLR+S K KV+V+DFV+DL Sbjct: 424 IDVLASVDLFNEGVDVPDVDLVVFMRATHSRRIFVQQLGRGLRLSHGKDKVIVMDFVTDL 483 Query: 498 RRLAEVVELEKAVRGDVERLRL-PGVIQFRDEGAGSFMLDWMKDQADLFTREGDPTLELP 556 RR+AEV+ELEKA G +ERL L +I FRD AG+FML+WMKDQADL REGD LE+P Sbjct: 484 RRVAEVIELEKASVGPLERLPLGHNLINFRDASAGNFMLEWMKDQADLILREGDAQLEIP 543 Query: 557 AFDFPAPHTWGGIQ 570 F+FPA GG+Q Sbjct: 544 KFEFPATPQPGGVQ 557 >A1SJ00.1 A1SJ00_NOCSJ Type III restriction enzyme, res subunit Length = 558 Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust. Identities = 234/553 (42%), Positives = 322/553 (58%), Gaps = 18/553 (3%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 FL + LL G + R L GF DVR+I G+GD GAD+L V++ E WV+QCKF+ Sbjct: 4 FLAPRALLAGGPRGLTLATERALWHLGFTDVRIIDGAGDEGADILAVRDREQWVLQCKFS 63 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLL 137 + G T VD A Y AD V T+ +A + +GI++ TL Sbjct: 64 SRGAVDRTGVDDAERARSRYGADHAVVVTNTSLNATAEARRKALGGIGIKVDAWAGPTLE 123 Query: 138 EMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFR 197 + + P PS+ +LR YQ+EA +R L +T R +VLATGLGKTVV E I + Sbjct: 124 AIYAKMPARVPSKYELRPYQLEAAERIQQDLEDTNRALLVLATGLGKTVVGGEVIRRHL- 182 Query: 198 DEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAV 257 E+ P R LV+A +ELV+QL+ A W L K +PT L G P+ + G+T AT+ S + Sbjct: 183 -ESHPDARILVVAHMKELVEQLEKALWRHLDKSVPTQVLTGDTRPTSFEGVTVATIDSVL 241 Query: 258 S--RLDELPDFGVVMIDEAHHVG-SDTFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLG 314 R D P ++MIDE HHVG + F ++ D+ +A GVTATPWRGD +DI G Sbjct: 242 GLVRTDWRP--SLIMIDETHHVGETGMFAQLLDECQDARQFGVTATPWRGDKFDITSRFG 299 Query: 315 PPVVRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEA 374 P +GIAEG+ G+L + DYR+ DN+DW FVR S + YSI +LNK L LP RDEE Sbjct: 300 QPSYSLGIAEGMADGYLAQVDYRMYVDNLDWDFVRHASEHGYSIKELNKALFLPQRDEEI 359 Query: 375 ARAIRDTFDKEFRRSAIIFCSSVTHATSFAAMLR---LFGFRAEPITGDMTSRERDRTMA 431 R + + AI+FC ++ HA A +L RA + ++ ++R + Sbjct: 360 VDEFRQAWREIRDPRAIVFCQTIEHAERMATLLAGADQSWRRASYLHSGLSRQQRQILLN 419 Query: 432 AFRKGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVL 491 AFR G + ++T D+FNEGVDVPDV++I F+RVTHSRRIFVQQLGRGLR+ K + VL Sbjct: 420 AFRLGRVPIITCVDVFNEGVDVPDVNLIAFLRVTHSRRIFVQQLGRGLRLREGKESLKVL 479 Query: 492 DFVSDLRRLAEVVELEK---AVR-GDVERLRLP----GVIQFRDEGAGSFMLDWMKDQAD 543 DFV+D+RR+A ++L++ A+R GD+E L LP I F DE AG+ + W++D AD Sbjct: 480 DFVTDVRRVAAGLDLKRTLAAIRGGDIEELSLPLPGGSQITFNDETAGTLLDYWIRDAAD 539 Query: 544 LFTREGDPTLELP 556 L T + L+ P Sbjct: 540 LETAADEVRLQFP 552 >D3CWE9.1 D3CWE9_9ACTO Type III restriction protein res subunit Length = 557 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 237/546 (43%), Positives = 312/546 (57%), Gaps = 33/546 (6%) Query: 31 AFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFTTGGYPSPTAVDQV 90 AF R V R+L+ GF DV I GS D G D+L +N E WV Q K+ + +VD+V Sbjct: 18 AFTRQVERVLLHLGFTDVTNIDGSYDQGGDILARRNGERWVFQTKWKSTASVGAASVDEV 77 Query: 91 GEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLLEMA-------RRS 143 +A YY ADR V T+ R GP++ +GI + + L+++ R Sbjct: 78 VKAKDYYSADRAAVVTNSRFGPSVLRRRDELLRVGIRVELWSGKELVQLYGEERAFLNRL 137 Query: 144 PEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQLFRDEAIPG 203 PE P LR YQ EA R +L E R +VLATGLGKTV+ E IA+ A Sbjct: 138 PERP-----LRPYQSEAFQRVTDALDEHQRALLVLATGLGKTVIGGEVIARHLSRHA--A 190 Query: 204 GRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQSAVS--RLD 261 GR LV+A T+ELV+QL+ A W + K T L G P D GIT ATV SA+S R Sbjct: 191 GRILVVAHTKELVEQLERALWFHISKGTRTQLLTGDHRPDDLRGITCATVFSALSYVRSG 250 Query: 262 ELPDFGVVMIDEAHHVGSD-TFRRVTDKMAEAMIGGVTATPWRGDGYDIDHLLGPPVVRI 320 PD +V++DEAHHV + F + D +++ GVTATPWRGD YDI H G PV + Sbjct: 251 YRPD--LVVVDEAHHVAENGYFAELLDLLSDVPQLGVTATPWRGDRYDIRHRFGEPVYTL 308 Query: 321 GIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDEEAARAIRD 380 GI +G+R GFL E YRL ADNIDW FVR+ SRN+Y+I LN L + RDE AIRD Sbjct: 309 GIEDGMRLGFLAEVRYRLFADNIDWDFVRAASRNNYAIKDLNARLFVAERDE----AIRD 364 Query: 381 TFDKEFRRS----AIIFCSSVTHATSFAAML-RLFGFR-AEPITGDMTSRERDRTMAAFR 434 + + R+ ++FC ++ HA A +L ++ ++ AE + ++ RER + FR Sbjct: 365 RLIEAYERTPDPRIVVFCRTIEHAERMAILLDQVPQWKGAEAVHAELHRRERQLRLMRFR 424 Query: 435 KGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVVLDFV 494 G ++T D+ NEGVDVPDV++I F RVTHSRRIFVQQLGRGLR+ K V LDFV Sbjct: 425 AGDTPIITAVDILNEGVDVPDVNIICFARVTHSRRIFVQQLGRGLRLRQGKSHVEALDFV 484 Query: 495 SDLRRLAEVVELEKAVRGD-VERLRLPGV---IQFRDEGAGSFMLDWMKDQADLFTREGD 550 SD+RR+A V+ L + V D VE LRL +F D + M +W+KD A L T + Sbjct: 485 SDIRRIAAVLNLRERVSADEVETLRLSNTGTRFEFSDRAVENLMQEWIKDAASLETALDE 544 Query: 551 PTLELP 556 L+ P Sbjct: 545 AKLQFP 550 >C7Q8S0.1 C7Q8S0_CATAD Type III restriction protein res subunit Length = 556 Score = 375 bits (964), Expect = e-102, Method: Compositional matrix adjust. Identities = 230/551 (41%), Positives = 314/551 (56%), Gaps = 17/551 (3%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 FL+ + LL + V R L GF DVR++ GSGD GAD+L V++ E WV QCK++ Sbjct: 5 FLSAEALLAAGPRGLPHAVERALWHLGFSDVRIVDGSGDDGADLLAVRDREQWVFQCKWS 64 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWA--ALGIEIGILEPAT 135 + VD + A Y+AD+ + T+ G A RR A ++GI I T Sbjct: 65 SNRAIDRQGVDDLERARHTYRADKAVLVTN--IGLNRSAEERRSALESIGINITTWTGPT 122 Query: 136 LLEMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQVVLATGLGKTVVLAESIAQL 195 L + R P P+ DLRDYQV A +R LR+ G +VLATGLGKTV+ E I + Sbjct: 123 LASIWERMPVRVPATFDLRDYQVTAANRVEADLRDHGSSLLVLATGLGKTVIGGEVIRRH 182 Query: 196 FRDEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQS 255 D P LV A +ELV+QL+ A W L K +PT + G P +G+ TV+S Sbjct: 183 LADR--PDAAVLVAAHMKELVEQLERALWRHLGKDVPTRLVTGDHKPPALDGVVVGTVES 240 Query: 256 AVS--RLDELPDFGVVMIDEAHHVGSD-TFRRVTDKMAEAMIGGVTATPWRGDGYDIDHL 312 + R L +VMIDE HHV + F + D +A GVTATPWRGD +DI Sbjct: 241 VLGLVRSGRLTP-SLVMIDETHHVSENGRFAELLDLCGDAARFGVTATPWRGDKFDITSR 299 Query: 313 LGPPVVRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTRDE 372 G P ++ IAEG+ G+L DYR+ DNIDW FVR S + YSI +LN+ L LP RDE Sbjct: 300 FGRPSFKMSIAEGMSAGYLSAVDYRIFVDNIDWEFVRRASDHQYSIKELNRQLFLPQRDE 359 Query: 373 EAARAIRDTFDKEFRRSAIIFCSSVTHATSFAAMLRLFGF---RAEPITGDMTSRERDRT 429 E R + + AI+FC ++ HA A +L RA + ++ + R Sbjct: 360 EILEFFRTAWRETRDPRAILFCQTIEHAEHIAKLLATADSAWQRATFLHSGLSRQRRQIL 419 Query: 430 MAAFRKGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVV 489 + FR G + V+T D+FNEGVDVPDV++I F+RVTHSRRIFVQQLGRGLR+SP K+++ Sbjct: 420 LNEFRLGRVPVITCVDVFNEGVDVPDVNLIGFLRVTHSRRIFVQQLGRGLRLSPGKKELK 479 Query: 490 VLDFVSDLRRLAEVVELEKAV-RGDVERLRLPGV---IQFRDEGAGSFMLDWMKDQADLF 545 VLDFV+D+RR+A ++L +++ + E LRL ++F DE AGS + +W+KD ADL Sbjct: 480 VLDFVTDIRRVAATLDLRRSLDESESEHLRLAAPHAGVRFSDETAGSLLDNWIKDAADLE 539 Query: 546 TREGDPTLELP 556 T + L+ P Sbjct: 540 TAADEVRLQFP 550 >A4SC93.1 A4SC93_PROVI Type III restriction enzyme, res subunit Length = 556 Score = 343 bits (881), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 203/551 (36%), Positives = 298/551 (54%), Gaps = 15/551 (2%) Query: 18 FLNTQRLLRGPWQAFERDVARLLICNGFEDVRLIGGSGDAGADVLGVKNSELWVIQCKFT 77 F+ +RL GPW AFER ARL GF DV ++GGSGD GADV+G N WV Q KF Sbjct: 4 FVCEERLTYGPWPAFERMAARLAQHAGFTDVAIVGGSGDLGADVVGAMNGSRWVFQAKFR 63 Query: 78 TGGYPSPTAVDQVGEAARYYQADRLYVATSRRAGPAMQASIRRWAALGIEIGILEPATLL 137 + G V + AA Y A +AT+ A+ R G+++ + A LL Sbjct: 64 SNGGTDGAGVHEAALAAGKYDAQTAVLATNTYFYENAYAAQREKNEAGLDMRLWNGAYLL 123 Query: 138 EMARRSPEYPPSRRDLRDYQVEAVDRFVGSLRETGRGQV-VLATGLGKTVVLAESIA-QL 195 E + P + R+LR+YQV AV+ G+ R + ++ATGLGK++V + IA +L Sbjct: 124 EFFEKLPTASHALRELRNYQVSAVEAVEGARAHGQRKALAIMATGLGKSMVANQVIANEL 183 Query: 196 FRDEAIPGGRALVLAGTRELVDQLQTAFWDQLPKWIPTHRLIGGEFPSDWNGITFATVQS 255 R+ P LVLA +LV QL+ + W QL K TH GE P+ G+ FAT QS Sbjct: 184 DRN---PCQEVLVLAHMSDLVRQLEASSWQQLGKGTSTHLWTDGEQPAYSGGVVFATWQS 240 Query: 256 AVSRLDE-----LPDFGVVMIDEAHHVGSDTFRRVTDKMAEAMIGGVTATPWRGDGYDID 310 S + + FG+V++DEAHH S F + + ++ + G+TATPWRGD + Sbjct: 241 LFSAMRKDAGSLRERFGLVVVDEAHHAPSVGFTELLEHLSPNFLAGLTATPWRGDERSLQ 300 Query: 311 HLLGPPVVRIGIAEGLRRGFLCEADYRLLADNIDWSFVRSHSRNSYSITQLNKLLLLPTR 370 L G PV + I G++ GFL DYR+L D I+W V S ++ LN L++P R Sbjct: 301 GLFGEPVFTLDIVAGMQMGFLAAVDYRMLTDGINWEEVSRASSQGLTVADLNSHLVVPER 360 Query: 371 DEEAARAIRDTFDKEFRRSAIIFCSSVTHATSFAAMLRLFGFRAEPITGDMTSRERDRTM 430 D I D A+ FC S+ HA + G + + + +R + + Sbjct: 361 DIGMVEVICDKMAGIKNPRALAFCRSIEHAERLQPLFASRGVKTALLHSQLPREQRFKNL 420 Query: 431 AAFRKGSLDVVTTRDLFNEGVDVPDVDMIVFMRVTHSRRIFVQQLGRGLRISPKKRKVVV 490 + FR G +D++ + ++ NEG+D+P+V+++ FMRVTHSRRIF+QQLGRGLRIS K V+V Sbjct: 421 SGFRMGHIDLLISIEMLNEGIDIPEVNLVAFMRVTHSRRIFLQQLGRGLRISKGKENVLV 480 Query: 491 LDFVSDLRRLAEVVEL-----EKAVRGDVERLRLPGVIQFRDEGAGSFMLDWMKDQADLF 545 LDFV+D+RR+A +E+ E++ +V R R +++F ++ F ++ D A L Sbjct: 481 LDFVADIRRIAAGLEINRLAKERSAGMEVVRYRDGQIVKFDNDAPLRFFEQYLADIASLD 540 Query: 546 TREGDPTLELP 556 + + D L P Sbjct: 541 SADEDSRLRFP 551