BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0013.p (409 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2Y6Z5.1 Q2Y6Z5_NITMU Phage integrase 541 e-152 D5T6J7.1 D5T6J7_LEGP2 Putative uncharacterized protein 541 e-152 A5IA00.1 A5IA00_LEGPC Integrase 541 e-152 C6N1Z8.1 C6N1Z8_9GAMM Integrase 532 e-149 Q3SK94.1 Q3SK94_THIDA Putative integrase prophage protein 530 e-148 >Q2Y6Z5.1 Q2Y6Z5_NITMU Phage integrase Length = 403 Score = 541 bits (1395), Expect = e-152, Method: Compositional matrix adjust. Identities = 258/399 (64%), Positives = 310/399 (77%), Gaps = 2/399 (0%) Query: 8 LKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGLQ 67 L D ++N K DKP KL+D GLYLL+ P G + WR Y + GK K LS+G YP++ L+ Sbjct: 3 LTDTAIRNTKSADKPLKLTDERGLYLLLKPNGSRWWRFDYRYGGKRKTLSMGVYPDVSLK 62 Query: 68 EARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYEK 127 +AR RRD ++LLAS +DP +NRKA+K A E+ N+FE I REW + W ++H E+ Sbjct: 63 DARNRRDEARKLLASDVDPGENRKAVKAAKLEKTTNSFEVITREWYAKFSPTWNESHGER 122 Query: 128 IVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVATG 187 I+ RFE D+FP++G KPI+ I AP+LL+ +R+IESRG +ETAHRAL NCGQVFRYA+AT Sbjct: 123 IIRRFERDIFPWIGSKPISEIAAPELLATVRRIESRGAVETAHRALGNCGQVFRYAIATA 182 Query: 188 RTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLVF 247 R RD + DLRGALP VK HFAAIT+PK+VG LLRA++GY GS V ALRLAPLVF Sbjct: 183 RATRDISADLRGALPPVKGE--HFAAITEPKQVGALLRAIDGYTGSHVVRCALRLAPLVF 240 Query: 248 VRPGELRAAEWAHIDLDAAEWRYTVTKTNTQHIVPLSTQAVEILKELQPLTGNGQYIFPS 307 VRPGELR AEW IDLD EWRYTVTKTNT HIVPLSTQAVEILKELQ LTG +++FP Sbjct: 241 VRPGELRKAEWKDIDLDGGEWRYTVTKTNTPHIVPLSTQAVEILKELQALTGRSRFVFPG 300 Query: 308 PRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAHAVR 367 R+ RPMSDNAIL+A+RRM I K+ MSGHGFRAMARTILDEVL R D IEHQLAH+VR Sbjct: 301 ARTNGRPMSDNAILAALRRMGIDKEEMSGHGFRAMARTILDEVLGVRPDFIEHQLAHSVR 360 Query: 368 DPNGRAYNRTSHLPERKRMMQRWADYLDSLGNGAEVVQL 406 DPNGRAYNRT+HLPER++MMQ+WADYLD L GAE++ L Sbjct: 361 DPNGRAYNRTAHLPERRKMMQQWADYLDKLKAGAEIIPL 399 >D5T6J7.1 D5T6J7_LEGP2 Putative uncharacterized protein Length = 406 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/393 (65%), Positives = 314/393 (79%), Gaps = 4/393 (1%) Query: 7 PLKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGL 66 PL+D ++NAK + KPYK+ D GLYL VAP+GGK WR +Y F+GK+K +SLG YP++ L Sbjct: 9 PLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSL 68 Query: 67 QEARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDG--WAKTH 124 ++AR RRD + ++A+ IDPS++RKA K A E AAN+FE +AREW W++ H Sbjct: 69 KQARDRRDECRTMVANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSSSGLWSEGH 128 Query: 125 YEKIVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAV 184 +KI+ R E D+FP++G PI+ I AP LLSV+R+IESRG L+TAHRAL NCGQ+FRYA+ Sbjct: 129 ADKIIQRLERDIFPWIGNIPISDINAPKLLSVVRRIESRGALDTAHRALGNCGQIFRYAI 188 Query: 185 ATGRTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAP 244 ATGR ERDP+ DLR ALP VK THFAA+T+PK+V +LLRAL+ Y+G+ V ALRLAP Sbjct: 189 ATGRAERDPSQDLRSALPPVKE--THFAAVTEPKDVAKLLRALDDYEGTLIVKCALRLAP 246 Query: 245 LVFVRPGELRAAEWAHIDLDAAEWRYTVTKTNTQHIVPLSTQAVEILKELQPLTGNGQYI 304 LVFVRPGELR+AEW HID D AEWRY VTKT+T HIVPLS QA++ILKEL P TG +Y+ Sbjct: 247 LVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQTGRDRYV 306 Query: 305 FPSPRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAH 364 FPS R K RPMSDNAIL+AMRRM I+K+ M+ HGFRAMARTILDEVL+ R D+IEHQLAH Sbjct: 307 FPSARDKKRPMSDNAILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLAH 366 Query: 365 AVRDPNGRAYNRTSHLPERKRMMQRWADYLDSL 397 AVRDPNGRAYNRT+HLPERK+MMQ WADYLD L Sbjct: 367 AVRDPNGRAYNRTAHLPERKKMMQAWADYLDEL 399 >A5IA00.1 A5IA00_LEGPC Integrase Length = 406 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 257/393 (65%), Positives = 314/393 (79%), Gaps = 4/393 (1%) Query: 7 PLKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGL 66 PL+D ++NAK + KPYK+ D GLYL VAP+GGK WR +Y F+GK+K +SLG YP++ L Sbjct: 9 PLQDTTIRNAKAEKKPYKMPDERGLYLEVAPSGGKWWRFRYRFEGKDKRISLGIYPDVSL 68 Query: 67 QEARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDG--WAKTH 124 ++AR RRD + ++A+ IDPS++RKA K A E AAN+FE +AREW W++ H Sbjct: 69 KQARDRRDECRTMVANEIDPSEHRKAKKAAKIENAANSFEVVAREWFLKFSSSGLWSEGH 128 Query: 125 YEKIVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAV 184 +KI+ R E D+FP++G PI+ I AP LLSV+R+IESRG L+TAHRAL NCGQ+FRYA+ Sbjct: 129 ADKIIQRLERDIFPWIGNIPISDINAPKLLSVVRRIESRGALDTAHRALGNCGQIFRYAI 188 Query: 185 ATGRTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAP 244 ATGR ERDP+ DLR ALP VK THFAA+T+PK+V +LLRAL+ Y+G+ V ALRLAP Sbjct: 189 ATGRAERDPSQDLRSALPPVKE--THFAAVTEPKDVAKLLRALDDYEGTLIVKCALRLAP 246 Query: 245 LVFVRPGELRAAEWAHIDLDAAEWRYTVTKTNTQHIVPLSTQAVEILKELQPLTGNGQYI 304 LVFVRPGELR+AEW HID D AEWRY VTKT+T HIVPLS QA++ILKEL P TG +Y+ Sbjct: 247 LVFVRPGELRSAEWEHIDFDTAEWRYKVTKTDTLHIVPLSQQALDILKELHPQTGRDRYV 306 Query: 305 FPSPRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAH 364 FPS R K RPMSDNAIL+AMRRM I+K+ M+ HGFRAMARTILDEVL+ R D+IEHQLAH Sbjct: 307 FPSARDKKRPMSDNAILAAMRRMGINKEEMTTHGFRAMARTILDEVLQFRPDIIEHQLAH 366 Query: 365 AVRDPNGRAYNRTSHLPERKRMMQRWADYLDSL 397 AVRDPNGRAYNRT+HLPERK+MMQ WADYLD L Sbjct: 367 AVRDPNGRAYNRTAHLPERKKMMQAWADYLDEL 399 >C6N1Z8.1 C6N1Z8_9GAMM Integrase Length = 393 Score = 532 bits (1370), Expect = e-149, Method: Compositional matrix adjust. Identities = 250/391 (63%), Positives = 308/391 (78%), Gaps = 2/391 (0%) Query: 9 KDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGLQE 68 K++ +NAKP+ K YK+SD GL++ V P G K WR+KY F GKEKLL+LG YP++ L + Sbjct: 5 KEITFRNAKPEKKAYKISDEKGLFMYVTPQGNKYWRMKYRFGGKEKLLALGVYPDVTLAK 64 Query: 69 ARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYEKI 128 AR +R++ ++LL IDP ++RK +K ER+AN+FE +AREW + W K+H +KI Sbjct: 65 ARDKRNDARKLLVDKIDPGEHRKIMKQVADERSANSFEVVAREWFVKYSSNWVKSHADKI 124 Query: 129 VGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVATGR 188 + RFE D+FP++G KPIA +T P LLSVIR+IE RG LETAHRAL+NCGQVFRYA+ATGR Sbjct: 125 MQRFERDIFPWIGNKPIAEVTPPILLSVIRRIEERGALETAHRALSNCGQVFRYAIATGR 184 Query: 189 TERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLVFV 248 ERD + DL+GALP VK++ HFAA TDPK G+LLR + Y+GS V ALRLAPLVFV Sbjct: 185 AERDSSQDLKGALPPVKTK--HFAAQTDPKNFGKLLRIIEDYEGSLIVRCALRLAPLVFV 242 Query: 249 RPGELRAAEWAHIDLDAAEWRYTVTKTNTQHIVPLSTQAVEILKELQPLTGNGQYIFPSP 308 RPGELR A+W ID DAA+W Y VTKT+T HIVPL+TQA+ ILKELQPLTGN ++FPS Sbjct: 243 RPGELRHAKWEDIDFDAAQWSYIVTKTDTPHIVPLATQAISILKELQPLTGNSTFVFPSA 302 Query: 309 RSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAHAVRD 368 RS RPMSDNAIL+A+RR+DISK+ +GHGFRA ART+LDEVL R D+IEHQLAHAVRD Sbjct: 303 RSNDRPMSDNAILAALRRLDISKEEATGHGFRATARTLLDEVLGVRPDIIEHQLAHAVRD 362 Query: 369 PNGRAYNRTSHLPERKRMMQRWADYLDSLGN 399 PNGRAYNRT+HL ERK+MMQ WA+YLD L N Sbjct: 363 PNGRAYNRTAHLSERKKMMQDWANYLDLLKN 393 >Q3SK94.1 Q3SK94_THIDA Putative integrase prophage protein Length = 400 Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust. Identities = 247/399 (61%), Positives = 317/399 (79%), Gaps = 2/399 (0%) Query: 8 LKDLQLKNAKPKDKPYKLSDGGGLYLLVAPTGGKGWRLKYLFQGKEKLLSLGTYPEIGLQ 67 L D++++ AKP KLSD GL+L ++P+GGK WRL Y + GK+KLLSLGTYP + L Sbjct: 2 LTDMKVRQAKPGPNVQKLSDSQGLFLHISPSGGKWWRLAYRYTGKQKLLSLGTYPAVSLA 61 Query: 68 EARKRRDNNKELLASGIDPSDNRKALKLAGAERAANNFEAIAREWLSTHKDGWAKTHYEK 127 +AR+RRD K+LLA G+DP++NRKA K A +RA+N+FEA+AREW + W+ H ++ Sbjct: 62 DARQRRDEAKKLLAHGVDPAENRKATKQARQDRASNSFEAVAREWHAKFSSTWSANHSDR 121 Query: 128 IVGRFENDVFPYLGRKPIAAITAPDLLSVIRKIESRGVLETAHRALANCGQVFRYAVATG 187 I+ R END+FP+LG KPIA IT P LL+ +R+IE RG +ETAHRA+ NCGQVFRY+VATG Sbjct: 122 IIRRLENDIFPWLGDKPIADITPPTLLAALRRIEERGAVETAHRAMQNCGQVFRYSVATG 181 Query: 188 RTERDPTGDLRGALPSVKSRRTHFAAITDPKEVGRLLRALNGYDGSPTVCAALRLAPLVF 247 R ERDP+ DL+GALP V ++HF +ITDP ++G LLR ++GY G P V +ALRLAPL+F Sbjct: 182 RAERDPSQDLKGALPPVA--KSHFKSITDPVQIGVLLRNIDGYSGGPVVRSALRLAPLIF 239 Query: 248 VRPGELRAAEWAHIDLDAAEWRYTVTKTNTQHIVPLSTQAVEILKELQPLTGNGQYIFPS 307 VRPGELR AEWAH DL AAEWRYTV+KTNT+HIVPLS QA+ +L+ELQPLTG+ +Y+FP+ Sbjct: 240 VRPGELRHAEWAHFDLGAAEWRYTVSKTNTEHIVPLSRQAISVLEELQPLTGHKRYVFPA 299 Query: 308 PRSKSRPMSDNAILSAMRRMDISKDVMSGHGFRAMARTILDEVLRERVDLIEHQLAHAVR 367 R + RPMS+N + +A+R + K+ ++GHGFRAMART+LDEVL R D+IEHQLAHAVR Sbjct: 300 NRGEGRPMSENTVNAALRSLGYDKETLTGHGFRAMARTLLDEVLGFRPDIIEHQLAHAVR 359 Query: 368 DPNGRAYNRTSHLPERKRMMQRWADYLDSLGNGAEVVQL 406 DP GRAYNRT+HLPER++MMQ WADYLD L GA V++L Sbjct: 360 DPLGRAYNRTTHLPERRKMMQGWADYLDELKAGATVIRL 398