BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0008.0024.p (715 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6T1A8.1 A6T1A8_JANMA Sensory box/GGDEF family protein 335 1e-89 C5JAX4.1 C5JAX4_9BACT Response regulator receiver modulated digu... 330 5e-88 F2KFF4.1 F2KFF4_PSEBR Putative diguanylate cyclase/phosphodieste... 321 3e-85 A6SVJ0.1 A6SVJ0_JANMA Uncharacterized conserved protein 320 5e-85 A0L8C6.1 A0L8C6_MAGSM Response regulator receiver modulated digu... 318 2e-84 >A6T1A8.1 A6T1A8_JANMA Sensory box/GGDEF family protein Length = 910 Score = 335 bits (859), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 190/423 (44%), Positives = 258/423 (60%), Gaps = 17/423 (4%) Query: 213 ENVLAFQAAHDPLTGLAHRGSFERRLKTM----ADQPHTV--VLGMIDRFERVVGGLGHA 266 E L A+HD LTGL +R + RL+ A H V VL +DRF+ V +GH Sbjct: 469 ETTLHRLASHDVLTGLPNRALLQDRLENAIAYSARNGHAVWVVLVDLDRFKFVNDTMGHQ 528 Query: 267 FGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDNVS--FQEALSSLQEYMRQ 324 GD L++ ++ R++ A+ R V RL G ++ GD S + + + E + + Sbjct: 529 AGDVLLKIISDRLQ-ASVRESDTVARLGGDEFVLVLPECGDGPSGYSSDVIQRIMEAVVK 587 Query: 325 PFEFGQHEIFSSMSMGGAEYPRDGAAPAAIAS-------LXADAGGDCFVQYSNALNTRA 377 P E F S SMG A YP DGA P + + + G + F Y+ A+N +A Sbjct: 588 PLTIQGSEFFLSCSMGIAVYPNDGADPTTLLAHADVAMYRSKELGRNNFQFYTPAMNDQA 647 Query: 378 QERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRRNG-ELISPADFIPLA 436 ERL +E +LRHAIE NEL LH+QPQ L +VG EALVRW ++ P FI LA Sbjct: 648 LERLRIEGELRHAIELNELVLHYQPQVDLHTGAIVGLEALVRWNHPILGMVQPGSFISLA 707 Query: 437 EESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTLAESM 496 EE+GLI+PIG WVL ACRQAK W + IAVN+S RQF S L + TL E+ Sbjct: 708 EETGLIIPIGAWVLQTACRQAKAWQDMGFTQLRIAVNLSARQFTQASLLESIKDTLQETG 767 Query: 497 IDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSIDKLK 556 ++ F+E+E+TE VM D+ER I L DL+ G+ L++DDFGTG+SSLAYLKRF ID LK Sbjct: 768 LEARFLEIELTESSVMADIERNILTLRDLKSLGVQLSVDDFGTGHSSLAYLKRFPIDTLK 827 Query: 557 IDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQGYFY 616 ID+SF+R + N +DA+IV ++I+L H+L L+VIAEGVET +Q ++LRA GC+EIQGY++ Sbjct: 828 IDRSFVRDIAINQDDASIVSSIISLAHNLKLNVIAEGVETASQMDILRAQGCNEIQGYYF 887 Query: 617 GRP 619 +P Sbjct: 888 CKP 890 >C5JAX4.1 C5JAX4_9BACT Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Length = 686 Score = 330 bits (846), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 189/429 (44%), Positives = 257/429 (59%), Gaps = 15/429 (3%) Query: 212 SENVLAFQAAHDPLTGLAHRGSFERRLK-TMADQPHT-----VVLGMIDRFERVVGGLGH 265 SE L F HD LTGL +R F RL + + H V+L +DRF+ V +GH Sbjct: 251 SEENLLFVTGHDALTGLPNRHLFHERLGFALEEAAHAGEMVWVLLLDLDRFKVVNETMGH 310 Query: 266 AFGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDNVSFQEALSSLQEYMRQP 325 GD L+ E++ R+ + G + RL G ++ S G++ + ++ + ++ P Sbjct: 311 DVGDTLILEVSRRLASLSHVKG-SLGRLGGDEFGVIIASAGESQIAAQTAQAMLDVLKTP 369 Query: 326 FEFGQHEIFSSMSMGGAEYPRDGA-APAAIASLXA------DAGGDCFVQYSNALNTRAQ 378 F E F S+G YP DGA A + ++ A + G + F Y N +NTRA Sbjct: 370 FMLRDMEYFVGASIGIGVYPLDGADAKTLMQNIDAALYHAKERGRNNFQFYRNEMNTRAM 429 Query: 379 ERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRRNG-ELISPADFIPLAE 437 + +E LR A+E++E EL+FQPQ L+ RL G EAL+RW R G ++SP +FIP+AE Sbjct: 430 NLIRMETSLRVALEKDEFELYFQPQMHLSSGRLAGVEALIRWNRPGLGMVSPGEFIPVAE 489 Query: 438 ESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTLAESMI 497 E+GLI+P+G W L +AC++A W F +AVN+S QF P F+ VT TL S + Sbjct: 490 ETGLIIPMGLWALTDACQRAFSWISAGHAPFRVAVNLSGIQFEQPDFVNLVTQTLKASGL 549 Query: 498 DPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSIDKLKI 557 D ++ELE+TE I M DVE T+ L+ L G+ LAIDDFGTG+SSL YLKRF ID LKI Sbjct: 550 DHQWLELELTESIAMGDVEETLIKLKSLSSVGVALAIDDFGTGFSSLKYLKRFPIDTLKI 609 Query: 558 DQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQGYFYG 617 DQSF+R+ + EDAAI++A I L H LGLSVIAEGVET Q E L++ GCDEIQGY Y Sbjct: 610 DQSFVRNCAEDVEDAAIIRAFIGLAHSLGLSVIAEGVETEEQLEFLKSHGCDEIQGYIYS 669 Query: 618 RPAVVPAVL 626 RP A++ Sbjct: 670 RPLSEAALM 678 >F2KFF4.1 F2KFF4_PSEBR Putative diguanylate cyclase/phosphodiesterase Length = 1007 Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 189/465 (40%), Positives = 264/465 (56%), Gaps = 20/465 (4%) Query: 212 SENVLAFQAAHDPLTGLAHRGSFERRLKTMA------DQPHTVVLGMIDRFERVVGGLGH 265 +E + F HD LTGL +R E RLK ++ TVV +D+F+ V LGH Sbjct: 542 TEKRIRFMGDHDALTGLPNRTLLEDRLKQAMLYAQRYNRLVTVVFLDLDKFKLVNDSLGH 601 Query: 266 AFGDRLMQEMATRIKRAAERHGGEVFRLNGAN-VAILYKSHGDNVSFQEALSSLQEYMRQ 324 + GD L++ +A R+ R V RL G V IL+ D L +QE + + Sbjct: 602 SAGDELLKTVAQRLL-GCVRRTDTVVRLGGDEFVIILFDQPSDLDGVTPVLHKIQEAILR 660 Query: 325 PFEFGQHEIFSSMSMGGAEYPRDGAAPAAIASLXADA--------GGDCFVQYSNALNTR 376 P + G H + + SMG A YP DG+ + S ADA G + F Y++ +N + Sbjct: 661 PIQLGGHTLHVTCSMGLATYPADGSDTDTLLS-NADAAMYRAKELGRNSFQFYTSEMNNK 719 Query: 377 AQERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRR-NGELISPADFIPL 435 Q +LA++ LR A+ +E L +QPQ L +++G EAL+RW+ ++SP FIP Sbjct: 720 VQGKLAMQDGLRSALYNDEFLLLYQPQVDLQSGQIIGVEALIRWQHPELGMVSPIKFIPQ 779 Query: 436 AEESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTLAES 495 AEE+GLIVPIGDWV+ ACRQ K W ++VNIS RQF + RV L E+ Sbjct: 780 AEETGLIVPIGDWVIHTACRQNKAWQNAGWPPITMSVNISARQFIERDLIDRVMHALQET 839 Query: 496 MIDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSIDKL 555 +DP ++ELE+TE ++M+D+++ I ++ L+ G++L+IDDFGTGYSSLA LK F I +L Sbjct: 840 GLDPMYLELELTESLIMQDLQQAISKMKALQAMGISLSIDDFGTGYSSLAALKSFPIARL 899 Query: 556 KIDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQGYF 615 KIDQSF+R L N D AI AVI+LGH L L VIAEGVET Q+ LR GCDEIQG+F Sbjct: 900 KIDQSFVRDLPDNENDKAIATAVISLGHKLNLKVIAEGVETEEQQTFLRDNGCDEIQGHF 959 Query: 616 YGRPAVVPAVLRPAAAAGAVVPAVL-RPAAIRHPAAGFPVRRTGP 659 + + + R +G P+ L P ++R R +GP Sbjct: 960 FSKAVSAEEISRLLRTSGVSEPSRLASPGSVRQKKRDVK-RPSGP 1003 >A6SVJ0.1 A6SVJ0_JANMA Uncharacterized conserved protein Length = 956 Score = 320 bits (820), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 184/437 (42%), Positives = 252/437 (57%), Gaps = 15/437 (3%) Query: 203 MYHVWARFRSENVLAFQAAHDPLTGLAHRGSFERRLKTMA------DQPHTVVLGMIDRF 256 +Y + A R E+ L FQ D LTGLA+R RL + P + +DRF Sbjct: 502 LYDITATKRYESELEFQTNRDALTGLANRSLLRDRLSQAISYAHRYNHPIWIAFVDLDRF 561 Query: 257 ERVVGGLGHAFGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDNVSFQEALS 316 + V LGH GD L++ +A R++ A R V R+ G ++ D + Sbjct: 562 KFVNDTLGHQAGDLLLKAIAERLQHAV-RDTDTVSRMGGDEFVLILPERVDAGLSTGIVQ 620 Query: 317 SLQEYMRQPFEFGQHEIFSSMSMGGAEYPRDGAAP------AAIASLXA-DAGGDCFVQY 369 + + + QP HE F S S+G A YP DG P A IA A + G + F Y Sbjct: 621 RIMDGIAQPLTIEGHEFFISSSIGVAVYPNDGVTPEELIKHADIAMYRAKETGRNNFQFY 680 Query: 370 SNALNTRAQERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRR-NGELIS 428 ++++N RA ERL LE LR+A+ER E LH+QPQ L ++VG EAL+RW+ +I Sbjct: 681 TSSMNERALERLRLEGDLRNAMERGEFILHYQPQLDLRTGKIVGVEALIRWQHPELGMIP 740 Query: 429 PADFIPLAEESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRV 488 P FI LAEE+GLIVPIG WV+ EACRQ K+W ++VN+S RQF L + Sbjct: 741 PMRFIGLAEETGLIVPIGAWVIREACRQNKVWQEHGLGSLRMSVNLSARQFAQQDLLESI 800 Query: 489 TTTLAESMIDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLK 548 L E+ + P +E+E+TE +VM DV+ I +L +L+ G+ L+IDDFGTGYSSL+YLK Sbjct: 801 ALALEETQLPPQCLEIELTESLVMADVDHAIGILRELKALGVQLSIDDFGTGYSSLSYLK 860 Query: 549 RFSIDKLKIDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGC 608 RF ID LKID+SF+ + + +DAAIV ++I+L H L L+VIAEGVET Q L+ C Sbjct: 861 RFPIDVLKIDRSFVNDITTDPDDAAIVASIISLAHSLRLTVIAEGVETEEQLAYLQQHDC 920 Query: 609 DEIQGYFYGRPAVVPAV 625 D+IQGYF+ RP A+ Sbjct: 921 DQIQGYFFSRPITADAM 937 >A0L8C6.1 A0L8C6_MAGSM Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) Length = 720 Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 184/427 (43%), Positives = 252/427 (59%), Gaps = 23/427 (5%) Query: 211 RSENVLAFQAAHDPLTGLAHRGSFERRL-KTMADQPHT-----VVLGMIDRFERVVGGLG 264 SE L + + HD LT L +R F RL +T+ + + V++ +DRF+ + +G Sbjct: 275 ESEENLLYLSGHDALTELPNRLLFHDRLNQTLVESADSGSIVAVLIVDLDRFKVINDSMG 334 Query: 265 HAFGDRLMQEMATRIKRAAERHGGEVFRLNGANVAILYKSHGDN----VSFQEALSSLQE 320 H GD L+ E+ATR+ RA + RL G I+ + N + QE L+ + Sbjct: 335 HEVGDSLLCEVATRL-RAICPAKATLARLGGDEFGIVLPNMTQNRDAALLAQEVLTRVA- 392 Query: 321 YMRQPFEFGQHEIFSSMSMGGAEYPRDGAAPAAIASLXADA-------GGDCFVQYSNAL 373 QP + E S+G YP DG P+ + A G + F Y + L Sbjct: 393 ---QPITISEVEFAVGASIGMTVYPLDGEKPSVLMRNAESAMYHAKQSGRNNFQFYRSEL 449 Query: 374 NTRAQERLALEAQLRHAIERNELELHFQPQQGLTDDRLVGFEALVRWRRNGE-LISPADF 432 NT + R+ LE+ LR+A++R E L +QPQ L +L+G EAL+RW+ + ++SP +F Sbjct: 450 NTASLARILLESGLRNAVDRQEFLLFYQPQMELATGKLIGMEALIRWQHPEQGMVSPGEF 509 Query: 433 IPLAEESGLIVPIGDWVLAEACRQAKIWSLETPRKFVIAVNISPRQFHHPSFLRRVTTTL 492 IPLAEE+GL++P+G W L EACRQ+K+W +T I+VN+S QF P F V T+ Sbjct: 510 IPLAEETGLVIPMGQWALKEACRQSKVWMDQTGVPLRISVNLSGIQFRLPDFTEMVMRTV 569 Query: 493 AESMIDPSFIELEITEGIVMRDVERTIELLEDLRKRGLTLAIDDFGTGYSSLAYLKRFSI 552 ES + P +ELE+TE I M DVE T+E L L + G+ LAIDDFGTG+SSL+YLK+F I Sbjct: 570 GESGLPPHCLELELTESIAMGDVEETLEKLTILSRFGVLLAIDDFGTGFSSLSYLKKFPI 629 Query: 553 DKLKIDQSFIRHLRPNSEDAAIVQAVINLGHHLGLSVIAEGVETVTQRELLRAWGCDEIQ 612 D LKIDQSF+R+ + EDAAI++A INL H L L VIAEGVE + Q E L CDEIQ Sbjct: 630 DTLKIDQSFVRNCTRDPEDAAIIRAFINLAHSLNLEVIAEGVEHLEQLEFLAQESCDEIQ 689 Query: 613 GYFYGRP 619 GYFYGRP Sbjct: 690 GYFYGRP 696