BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0193.p (327 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZ49.1 D8IZ49_HERSS ABC-type amino acid transport system, perm... 523 e-146 F1VTS9.1 F1VTS9_9BURK ABC-type branched-chain amino acid transpo... 472 e-131 Q46VV9.1 Q46VV9_CUPPJ Inner-membrane translocator 454 e-126 A6GPE6.1 A6GPE6_9BURK ABC-type transporter, permease component 452 e-125 B7WRS6.1 B7WRS6_COMTE Inner-membrane translocator 440 e-121 >D8IZ49.1 D8IZ49_HERSS ABC-type amino acid transport system, permease component protein Length = 326 Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust. Identities = 271/308 (87%), Positives = 289/308 (93%), Gaps = 1/308 (0%) Query: 5 LNKKLFYGALLILALLAPFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGA 64 +NKK+ LLIL L APFG+YPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAF G A Sbjct: 1 MNKKIGIAVLLILLLAAPFGIYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWA 60 Query: 65 GYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 124 GY+ GQA+K WG+PTE+GLI+GTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA Sbjct: 61 GYMCGQALKVWGLPTELGLIIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 120 Query: 125 LQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLK 184 LQAPFTGGEDGLQG+PRGKLLGF++L SDMTLYYVVLAIA+AGFALIVRTIHSPFGQVLK Sbjct: 121 LQAPFTGGEDGLQGVPRGKLLGFLNLESDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLK 180 Query: 185 AIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVL 244 AIKENEPRAISLGYDV RYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVL Sbjct: 181 AIKENEPRAISLGYDVARYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 Query: 245 MTLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIV 304 MTLVGGLGTI+GPIVGAVIIIMLENKLGDIG WLASVTHI+WFNTLGDSVTIVTGFIFIV Sbjct: 241 MTLVGGLGTILGPIVGAVIIIMLENKLGDIGAWLASVTHIDWFNTLGDSVTIVTGFIFIV 300 Query: 305 SCSLLRRR 312 C L R+ Sbjct: 301 -CVLAFRK 307 >F1VTS9.1 F1VTS9_9BURK ABC-type branched-chain amino acid transport system, permease component Length = 320 Score = 472 bits (1214), Expect = e-131, Method: Compositional matrix adjust. Identities = 242/308 (78%), Positives = 268/308 (87%), Gaps = 1/308 (0%) Query: 5 LNKKLFYGALLILALLAPFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGA 64 +NKK+ Y +L L APF LYPVFLMK+LCFALFACAFNLLIG+TGLLSFGHAAFFGGA Sbjct: 1 MNKKIGYVIVLAALLAAPFWLYPVFLMKVLCFALFACAFNLLIGFTGLLSFGHAAFFGGA 60 Query: 65 GYVAGQAIKAWGVPTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVA 124 GYVAG A+ G+P E+G++LGTL GALIGL MG AIRRQGIYFTMITLALAQML+FV Sbjct: 61 GYVAGYAMATLGLPPEVGILLGTLAGALIGLFMGSFAIRRQGIYFTMITLALAQMLYFVF 120 Query: 125 LQAPFTGGEDGLQGIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLK 184 LQA FTGGEDGLQG+PRGKLLGFIDLS+D+TLYYVV+ IA+ GFA+I+R +HS FGQVLK Sbjct: 121 LQAKFTGGEDGLQGVPRGKLLGFIDLSNDLTLYYVVMLIAVGGFAVIMRVVHSHFGQVLK 180 Query: 185 AIKENEPRAISLGYDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVL 244 AIKENEPRAISLGYDVDRYKLLAFVLSA L+GLAG+TK L+LGFETLTDVHWSMSGLVVL Sbjct: 181 AIKENEPRAISLGYDVDRYKLLAFVLSAGLSGLAGATKTLVLGFETLTDVHWSMSGLVVL 240 Query: 245 MTLVGGLGTIVGPIVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIV 304 MTLVGGLGT+ GPIVGAVIII LENKLG G WLA+ T IEWF T+G SVTIV G IFI+ Sbjct: 241 MTLVGGLGTLSGPIVGAVIIIALENKLGSYGTWLANFTSIEWFRTIGQSVTIVIGLIFII 300 Query: 305 SCSLLRRR 312 C L RR Sbjct: 301 -CVLAFRR 307 >Q46VV9.1 Q46VV9_CUPPJ Inner-membrane translocator Length = 342 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 225/289 (77%), Positives = 255/289 (88%), Gaps = 1/289 (0%) Query: 24 GLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEIGL 83 G YPVF++K+LCFALFACAFNLLIGYTGLLSFGHAAFFGGAGY++G+A+K WGV EIGL Sbjct: 40 GAYPVFVLKVLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYISGEAMKVWGVTPEIGL 99 Query: 84 ILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGIPRGK 143 ILGT GA IG V+G LAIRRQGIYF+MITLALAQMLFF+ LQAPFTGGEDGLQGIPRGK Sbjct: 100 ILGTAGGAAIGYVVGSLAIRRQGIYFSMITLALAQMLFFICLQAPFTGGEDGLQGIPRGK 159 Query: 144 LLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVDRY 203 L G + LS D+TLYYV L I +A FALIVRT+HSPFGQ+LKAIKENEPRAISLGYDVDR+ Sbjct: 160 LFGVLSLSDDLTLYYVALVIIVAAFALIVRTVHSPFGQILKAIKENEPRAISLGYDVDRF 219 Query: 204 KLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGAVI 263 KL AFVLSAAL+GLAGS KAL+LGFETLTDVHWSMSG V+LMTLVGGLGT+ GPIVGA + Sbjct: 220 KLTAFVLSAALSGLAGSIKALVLGFETLTDVHWSMSGSVILMTLVGGLGTLSGPIVGAFV 279 Query: 264 IIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVSCSLLRRR 312 ++ LENKLGDIG +LAS T +WFN+LG+SVT+V G IF++ C L RR Sbjct: 280 VVALENKLGDIGAFLASATGFQWFNSLGESVTMVIGAIFVI-CVLTFRR 327 >A6GPE6.1 A6GPE6_9BURK ABC-type transporter, permease component Length = 328 Score = 452 bits (1163), Expect = e-125, Method: Compositional matrix adjust. Identities = 224/290 (77%), Positives = 253/290 (87%) Query: 22 PFGLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGVPTEI 81 PF +YPV LMK+LCFALFACAFNLLIGYTGLLSFGHAAF GGAGY+AG I+ G+P E+ Sbjct: 20 PFFMYPVLLMKLLCFALFACAFNLLIGYTGLLSFGHAAFLGGAGYIAGYVIRDLGLPFEL 79 Query: 82 GLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQGIPR 141 GL+ G A +GLVMG LAIRRQGIYFTMITLALAQML+F+ LQAPFTGGEDGLQGIPR Sbjct: 80 GLLAGVAFAAFLGLVMGALAIRRQGIYFTMITLALAQMLYFIFLQAPFTGGEDGLQGIPR 139 Query: 142 GKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLGYDVD 201 G LLG +DLS D+TLY+VVLAI IAG+ALIVRT+HSPFGQVLKAIKENEPRAISLGYDVD Sbjct: 140 GTLLGVVDLSDDLTLYFVVLAICIAGYALIVRTVHSPFGQVLKAIKENEPRAISLGYDVD 199 Query: 202 RYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGPIVGA 261 +YKLL FVLSAAL+GLAG+TKA +LGFETLTDVHW+MSGLVVLMTLVGGLGT+ GPIVGA Sbjct: 200 KYKLLVFVLSAALSGLAGATKASVLGFETLTDVHWTMSGLVVLMTLVGGLGTLAGPIVGA 259 Query: 262 VIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVSCSLLRR 311 ++II LEN++G+ G W+A T I WF +LG+ VTIVTGFIFIV RR Sbjct: 260 IVIIALENRIGEFGTWMAVTTDIAWFRSLGEQVTIVTGFIFIVVVLAFRR 309 >B7WRS6.1 B7WRS6_COMTE Inner-membrane translocator Length = 330 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 218/295 (73%), Positives = 257/295 (87%), Gaps = 2/295 (0%) Query: 19 LLAPF-GLYPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFFGGAGYVAGQAIKAWGV 77 ++APF G YPVF+MK++CFALFA AFNLL+GYTGLLSFGHAAF GGA YVAG +IKAWG Sbjct: 23 IVAPFLGAYPVFVMKLMCFALFASAFNLLLGYTGLLSFGHAAFLGGAAYVAGYSIKAWGF 82 Query: 78 PTEIGLILGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQAPFTGGEDGLQ 137 EIG++LGTL GAL+GL+ G LAIRRQGIYF+MITLALAQMLFFVALQA FTGGEDGLQ Sbjct: 83 TPEIGMLLGTLVGALLGLIFGWLAIRRQGIYFSMITLALAQMLFFVALQAKFTGGEDGLQ 142 Query: 138 GIPRGKLLGFIDLSSDMTLYYVVLAIAIAGFALIVRTIHSPFGQVLKAIKENEPRAISLG 197 G+PRGKL G IDLSSDM +YYV L I +A F LIVRTIHSPFGQVLKAIKENEPRAISLG Sbjct: 143 GVPRGKLFGVIDLSSDMVMYYVALVIVVAAFLLIVRTIHSPFGQVLKAIKENEPRAISLG 202 Query: 198 YDVDRYKLLAFVLSAALTGLAGSTKALILGFETLTDVHWSMSGLVVLMTLVGGLGTIVGP 257 YDV+R+KLLAFV+SAALTGLAGS K L+LGF TL+DVHW+ SG V+LMTL+GGLGT+ GP Sbjct: 203 YDVNRFKLLAFVISAALTGLAGSLKTLVLGFATLSDVHWTTSGHVILMTLMGGLGTLSGP 262 Query: 258 IVGAVIIIMLENKLGDIGNWLASVTHIEWFNTLGDSVTIVTGFIFIVSCSLLRRR 312 ++G+ +++ LENK+G++G +LA T +EWF TLG+SVTIVTG IF++ C LL R+ Sbjct: 263 LLGSAVVVALENKIGEVGTFLAHTTGVEWFGTLGESVTIVTGLIFVL-CVLLFRK 316