BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0190.p (315 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D5N9M2.1 D5N9M2_9BURK Transcriptional regulator, AraC family 369 e-100 E8YP63.1 E8YP63_9BURK Transcriptional regulator, AraC family 364 9e-99 B5WMI1.1 B5WMI1_9BURK Transcriptional regulator, AraC family 364 1e-98 D5WCE4.1 D5WCE4_BURSC Transcriptional regulator, AraC family 364 1e-98 B1G244.1 B1G244_9BURK Transcriptional regulator, AraC family 362 4e-98 >D5N9M2.1 D5N9M2_9BURK Transcriptional regulator, AraC family Length = 323 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 174/287 (60%), Positives = 217/287 (75%) Query: 22 PDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGNL 81 PDLELV V + ESF +WSHGYPYRTVRWHFHPEYEIQLIT+T+GKYFVGD+IG F PGNL Sbjct: 21 PDLELVAVPRDESFKVWSHGYPYRTVRWHFHPEYEIQLITSTTGKYFVGDYIGNFAPGNL 80 Query: 82 VLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGLV 141 V++G NLPHNW+S+V G++V ER +I+QF EFI I A EL +E LL ++ GL+ Sbjct: 81 VMVGSNLPHNWVSNVPRGDRVDERCLILQFDVEFIARAIQALPELKRVEPLLDASRWGLL 140 Query: 142 FTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSR 201 F+P TGAAA PIMR +L +G +RI LFLAL DL+ V LAS Y D Y +R Sbjct: 141 FSPETGAAAEPIMREMLGAQGMRRITLFLALFDLLVQSSAPVKLASAAYRADPARYAETR 200 Query: 202 LNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACELL 261 +NHVL +I +NL +LRE+ LAEL QS SAFSR FR+HTG+ +QY+NRLRIN AC+LL Sbjct: 201 INHVLSYIGKNLSQELRETELAELAGQSVSAFSRFFRRHTGVPFVQYVNRLRINLACQLL 260 Query: 262 MQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQELNLAS 308 M +L+ITDIC++VGFNN+SNFNR FL+ K + PS +R +Q+LN AS Sbjct: 261 MSDELTITDICYQVGFNNLSNFNRQFLLLKNMPPSRWRAFQQLNAAS 307 >E8YP63.1 E8YP63_9BURK Transcriptional regulator, AraC family Length = 327 Score = 364 bits (935), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 165/294 (56%), Positives = 218/294 (74%) Query: 22 PDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGNL 81 PDLE+V+VR+ ESF +WSHGYPYRTVRWHFHPEYEI LI AT+GK FVGD I F PGNL Sbjct: 3 PDLEIVEVRRDESFKVWSHGYPYRTVRWHFHPEYEIHLIVATTGKMFVGDHISSFAPGNL 62 Query: 82 VLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGLV 141 VL+GPNLPHNW+SDV GE + +R ++VQF EF++ + +F E ++E LL D++ G+ Sbjct: 63 VLMGPNLPHNWVSDVPEGESIAQRNLVVQFGQEFVSSCLESFPEWRQVEALLADSRRGVS 122 Query: 142 FTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSR 201 F T AA P+ LL RG +R+ LF+++L+++ D R LAS Y D + S+R Sbjct: 123 FGARTSAAIQPLFLELLAARGLRRLVLFMSMLEILMNADDRETLASPAYQADPTGFASTR 182 Query: 202 LNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACELL 261 +NHVL +I +NL +LRES LA+L QS SAFSR FR+HTG+ +QY+NR+RIN AC+LL Sbjct: 183 INHVLSYIGKNLANELRESDLAQLAGQSVSAFSRYFRRHTGLPFVQYVNRMRINLACQLL 242 Query: 262 MQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQELNLASRNLAQAA 315 +LS+TDICF+ GFNN+SNFNR FL KG++PS FR+YQ+LN ASR+ ++ A Sbjct: 243 TDSELSVTDICFKAGFNNLSNFNRQFLAAKGMAPSKFRRYQQLNDASRDASEEA 296 >B5WMI1.1 B5WMI1_9BURK Transcriptional regulator, AraC family Length = 325 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 167/294 (56%), Positives = 219/294 (74%) Query: 22 PDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGNL 81 PDLE+V VR ESF +WSHGYPYRTVRWHFHPEYEI LI AT+GK FVGD IG F PGNL Sbjct: 3 PDLEIVAVRHDESFKVWSHGYPYRTVRWHFHPEYEIHLIVATTGKMFVGDHIGSFAPGNL 62 Query: 82 VLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGLV 141 VL+GPNLPHNW+SDV GE V +R ++VQF EF+++ + +F E ++E LL DA+ GL Sbjct: 63 VLMGPNLPHNWVSDVPEGESVAQRNLVVQFGQEFVSNCLESFPEWRQVEALLADARRGLS 122 Query: 142 FTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSR 201 F T A P+ LL RG +R+ LF+++L+++ R LAS Y D ++ ++R Sbjct: 123 FGQETSAQIKPLFLDLLAARGLRRLVLFMSMLEILMNAPDRDTLASPAYQADPTSFAATR 182 Query: 202 LNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACELL 261 +NHVL +I +NL +LRES LA+L QS SAFSR FR+HTG+ +QY+NR+RIN AC+LL Sbjct: 183 INHVLAYIGKNLANELRESELAQLAGQSVSAFSRYFRRHTGLPFVQYVNRMRINLACQLL 242 Query: 262 MQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQELNLASRNLAQAA 315 G+LS+TDICF+ GFNN+SNFNR FL KG++PS+FR+YQ+LN ASR+ ++ A Sbjct: 243 TDGELSVTDICFKAGFNNLSNFNRQFLATKGMAPSTFRRYQQLNDASRDASEQA 296 >D5WCE4.1 D5WCE4_BURSC Transcriptional regulator, AraC family Length = 325 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 167/294 (56%), Positives = 219/294 (74%) Query: 22 PDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGNL 81 PDLE+V VR ESF +WSHGYPYRTVRWHFHPEYEI LI AT+GK FVGD IG F PGNL Sbjct: 3 PDLEIVAVRHDESFKVWSHGYPYRTVRWHFHPEYEIHLIVATTGKMFVGDHIGSFAPGNL 62 Query: 82 VLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGLV 141 VL+GPNLPHNW+SDV GE V +R ++VQF EF+++ + +F E ++E LL DA+ GL Sbjct: 63 VLMGPNLPHNWVSDVPEGESVAQRNLVVQFGQEFVSNCLESFPEWRQVEALLADARRGLS 122 Query: 142 FTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSR 201 F T A P+ LL RG +R+ LF+++L+++ R LAS Y D ++ ++R Sbjct: 123 FGLETSAQIKPLFLELLAARGLRRLVLFMSMLEILMNAPDRDTLASPAYQADPTSFAATR 182 Query: 202 LNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACELL 261 +NHVL +I +NL +LRES LA+L QS SAFSR FR+HTG+ +QY+NR+RIN AC+LL Sbjct: 183 INHVLAYIGKNLSNELRESELAQLAGQSVSAFSRYFRRHTGLPFVQYVNRMRINLACQLL 242 Query: 262 MQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQELNLASRNLAQAA 315 G+LS+TDICF+ GFNN+SNFNR FL KG++PS+FR+YQ+LN ASR+ ++ A Sbjct: 243 TDGELSVTDICFKAGFNNLSNFNRQFLAMKGMAPSTFRRYQQLNDASRDASEQA 296 >B1G244.1 B1G244_9BURK Transcriptional regulator, AraC family Length = 330 Score = 362 bits (929), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 165/294 (56%), Positives = 218/294 (74%) Query: 22 PDLELVDVRQGESFAIWSHGYPYRTVRWHFHPEYEIQLITATSGKYFVGDFIGQFQPGNL 81 PDLE+V VR+ ESF +WSHGYPYRTVRWHFHPEYEI LI AT+GK FVGD I F PGNL Sbjct: 3 PDLEIVAVRRDESFKVWSHGYPYRTVRWHFHPEYEIHLIVATTGKMFVGDHISSFAPGNL 62 Query: 82 VLLGPNLPHNWISDVAPGEQVPERGIIVQFPGEFINHGIHAFAELHELENLLLDAQAGLV 141 VL+GPNLPHNW+SDV GE + +R ++VQF EF++ + +F E ++E LL D++ G+ Sbjct: 63 VLMGPNLPHNWVSDVPEGENIAQRNLVVQFGQEFVSSCLESFPEWRQVEALLADSRRGVS 122 Query: 142 FTPATGAAALPIMRTLLTTRGCKRIQLFLALLDLMTADDGRVALASHGYIPDALAYMSSR 201 F T AA P+ LL RG +R+ LF+++L+++ + + R LAS Y D + S+R Sbjct: 123 FGARTSAAIQPLFLELLGARGLRRLVLFMSMLEILMSAEDRETLASPAYQADPTGFASTR 182 Query: 202 LNHVLRFIAENLDTDLRESSLAELTQQSASAFSRSFRKHTGMSCIQYINRLRINGACELL 261 +NHVL +I +NL DLRES LA+L QS SAFSR FR+HTG+ +QY+NR+RIN AC+LL Sbjct: 183 INHVLSYIGKNLANDLRESDLAQLAGQSVSAFSRYFRRHTGLPFVQYVNRMRINLACQLL 242 Query: 262 MQGDLSITDICFRVGFNNVSNFNRHFLIQKGVSPSSFRKYQELNLASRNLAQAA 315 +LS+TDICF+ GFNN+SNFNR FL KG++PS FR+YQ+LN ASR+ ++ A Sbjct: 243 TDSELSVTDICFKAGFNNLSNFNRQFLAVKGMAPSKFRRYQQLNDASRDASEEA 296