BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0183.p (257 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B9TJ63.1 B9TJ63_RICCO Inner membrane protein yfcA, putative 352 3e-95 D8IZ48.1 D8IZ48_HERSS Permease protein 352 4e-95 A4GAI3.1 A4GAI3_HERAR Putative uncharacterized protein 328 5e-88 F1VTT0.1 F1VTT0_9BURK Putative uncharacterized protein 317 1e-84 D8N3Q8.1 D8N3Q8_RALSO Putative uncharacterized protein 301 4e-80 >B9TJ63.1 B9TJ63_RICCO Inner membrane protein yfcA, putative Length = 301 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 193/251 (76%), Positives = 217/251 (86%) Query: 7 NYVILCIGAFVAGLVDAVVGGGGLVLIPTLFSVFPNVAPATLLGTNKVAGVMGTSAAAIN 66 +Y+ILC AFVAGL+DAVVGGGGLVL+PTLFSVFP PATLLGTNKV GVMGTSAAAIN Sbjct: 51 DYLILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAIN 110 Query: 67 FARKVRIHWAAAAPAALAAFALSFSGAYLVTHVPTDMMRKALPFILLAVAIYTLKKKDFG 126 FARKV + W+ PAA+AAFA SF GAY+VTH+PTD++RKALPF+L+AVA+YTLKKKDFG Sbjct: 111 FARKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFG 170 Query: 127 QHHAPLLSGGKERLYAILVGAGVGFYDGLFGPGTGSFFVFLFVRIFGYDFLRASAVSKVV 186 HAP LSG +E YA L+G VGFYDG+FGPGTGSF VFLFVR+F YDFL ASA +K V Sbjct: 171 TTHAPTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFV 230 Query: 187 NIATNLAALVWFSYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSSFVRKLFLFVVSAL 246 N+ATNLAAL WF YSGHVIWQLGLLMAVFN+ GSLVGT+LAMKHGS FVRKLFL VV L Sbjct: 231 NVATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVL 290 Query: 247 ILKTGYDAFLK 257 ILK+GYDAFL+ Sbjct: 291 ILKSGYDAFLR 301 >D8IZ48.1 D8IZ48_HERSS Permease protein Length = 303 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 193/251 (76%), Positives = 217/251 (86%) Query: 7 NYVILCIGAFVAGLVDAVVGGGGLVLIPTLFSVFPNVAPATLLGTNKVAGVMGTSAAAIN 66 +Y+ILC AFVAGL+DAVVGGGGLVL+PTLFSVFP PATLLGTNKV GVMGTSAAAIN Sbjct: 53 DYLILCGAAFVAGLIDAVVGGGGLVLVPTLFSVFPTTTPATLLGTNKVTGVMGTSAAAIN 112 Query: 67 FARKVRIHWAAAAPAALAAFALSFSGAYLVTHVPTDMMRKALPFILLAVAIYTLKKKDFG 126 FARKV + W+ PAA+AAFA SF GAY+VTH+PTD++RKALPF+L+AVA+YTLKKKDFG Sbjct: 113 FARKVAVRWSTVTPAAMAAFAFSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFG 172 Query: 127 QHHAPLLSGGKERLYAILVGAGVGFYDGLFGPGTGSFFVFLFVRIFGYDFLRASAVSKVV 186 HAP LSG +E YA L+G VGFYDG+FGPGTGSF VFLFVR+F YDFL ASA +K V Sbjct: 173 TTHAPTLSGSREIFYAALIGGAVGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAAAKFV 232 Query: 187 NIATNLAALVWFSYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSSFVRKLFLFVVSAL 246 N+ATNLAAL WF YSGHVIWQLGLLMAVFN+ GSLVGT+LAMKHGS FVRKLFL VV L Sbjct: 233 NVATNLAALCWFGYSGHVIWQLGLLMAVFNVAGSLVGTKLAMKHGSVFVRKLFLVVVGVL 292 Query: 247 ILKTGYDAFLK 257 ILK+GYDAFL+ Sbjct: 293 ILKSGYDAFLR 303 >A4GAI3.1 A4GAI3_HERAR Putative uncharacterized protein Length = 254 Score = 328 bits (841), Expect = 5e-88, Method: Compositional matrix adjust. Identities = 181/251 (72%), Positives = 211/251 (84%) Query: 6 SNYVILCIGAFVAGLVDAVVGGGGLVLIPTLFSVFPNVAPATLLGTNKVAGVMGTSAAAI 65 +YVIL AFVAG++DAVVGGGGL+ +P LFS PNVAPATLLGT+K+AGV GT AAA+ Sbjct: 2 EDYVILAAAAFVAGMIDAVVGGGGLIQLPALFSTLPNVAPATLLGTSKLAGVWGTGAAAL 61 Query: 66 NFARKVRIHWAAAAPAALAAFALSFSGAYLVTHVPTDMMRKALPFILLAVAIYTLKKKDF 125 FAR+VR+ W+ A PAA+AAFALSF+GAY VTH+P D +RK LPFIL+AVA YT KKDF Sbjct: 62 GFARRVRVQWSTAVPAAVAAFALSFAGAYTVTHIPPDFIRKLLPFILVAVAAYTFAKKDF 121 Query: 126 GQHHAPLLSGGKERLYAILVGAGVGFYDGLFGPGTGSFFVFLFVRIFGYDFLRASAVSKV 185 G HAPL GGKER +AILVG G+GFYDG FGPGTGSF VFLFVR FG+DFL ASAV+KV Sbjct: 122 GSIHAPLHIGGKERAWAILVGGGIGFYDGFFGPGTGSFLVFLFVRFFGFDFLGASAVAKV 181 Query: 186 VNIATNLAALVWFSYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSSFVRKLFLFVVSA 245 VN+A N+AAL+WF YSGH++WQLG LMAV N+ GSLVG RLA++HGS FVRKLFL VV+ Sbjct: 182 VNVACNIAALLWFGYSGHLLWQLGALMAVCNVLGSLVGIRLALRHGSGFVRKLFLVVVTG 241 Query: 246 LILKTGYDAFL 256 LILKTGYDAF+ Sbjct: 242 LILKTGYDAFI 252 >F1VTT0.1 F1VTT0_9BURK Putative uncharacterized protein Length = 299 Score = 317 bits (811), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 170/252 (67%), Positives = 203/252 (80%) Query: 6 SNYVILCIGAFVAGLVDAVVGGGGLVLIPTLFSVFPNVAPATLLGTNKVAGVMGTSAAAI 65 + L + AF AG VDAVVGGGGL+ +P LFSVFPN+APATLLGTNK++G GT AAAI Sbjct: 48 DEFAFLYVAAFFAGFVDAVVGGGGLIQLPALFSVFPNIAPATLLGTNKLSGFWGTGAAAI 107 Query: 66 NFARKVRIHWAAAAPAALAAFALSFSGAYLVTHVPTDMMRKALPFILLAVAIYTLKKKDF 125 +FAR+V+I W+AA PAA+AAF +F+GAY VT +P D +RK LP IL+AVA YTLK+KD Sbjct: 108 SFARRVKIEWSAAVPAAVAAFVFAFAGAYTVTRIPPDFIRKMLPLILIAVAAYTLKRKDM 167 Query: 126 GQHHAPLLSGGKERLYAILVGAGVGFYDGLFGPGTGSFFVFLFVRIFGYDFLRASAVSKV 185 G HAPL G KER AI VG VGFYDG FGPGTGSF VFLFVR+FG+DFL ASAV+KV Sbjct: 168 GSTHAPLHKGAKERWLAIAVGGSVGFYDGFFGPGTGSFLVFLFVRVFGFDFLGASAVAKV 227 Query: 186 VNIATNLAALVWFSYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSSFVRKLFLFVVSA 245 VN+A N++AL+WF SGH++WQ+GL MAV N+ GSL+G+R+A+KHGS FVRKLFL VV Sbjct: 228 VNVACNISALLWFWKSGHLLWQIGLAMAVCNVLGSLIGSRMAIKHGSGFVRKLFLAVVLL 287 Query: 246 LILKTGYDAFLK 257 LILKTGYDAF K Sbjct: 288 LILKTGYDAFFK 299 >D8N3Q8.1 D8N3Q8_RALSO Putative uncharacterized protein Length = 252 Score = 301 bits (772), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 148/251 (58%), Positives = 196/251 (78%) Query: 7 NYVILCIGAFVAGLVDAVVGGGGLVLIPTLFSVFPNVAPATLLGTNKVAGVMGTSAAAIN 66 +V+L + F+AGL+DAV GGGGLV IP LFS +PN+APATL+GTNK+A + GT+ AA Sbjct: 2 EFVLLAVAGFLAGLIDAVAGGGGLVQIPALFSAYPNLAPATLIGTNKLASMSGTATAAAR 61 Query: 67 FARKVRIHWAAAAPAALAAFALSFSGAYLVTHVPTDMMRKALPFILLAVAIYTLKKKDFG 126 + R VRI+W+A APA + AF S GA+ +TH+P + +R+ALPF+L+ + +YT+ KKD G Sbjct: 62 YGRTVRIYWSATAPAVVTAFLCSLLGAWALTHIPAEPLRRALPFVLVLLLVYTVAKKDLG 121 Query: 127 QHHAPLLSGGKERLYAILVGAGVGFYDGLFGPGTGSFFVFLFVRIFGYDFLRASAVSKVV 186 HAP L+G +ER A+L GA +GFYDG+FGPGTGSF + +FVR+FGYDFL ASA +K+V Sbjct: 122 AEHAPSLAGWRERGVALLAGAIIGFYDGVFGPGTGSFLMIVFVRVFGYDFLHASASTKIV 181 Query: 187 NIATNLAALVWFSYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSSFVRKLFLFVVSAL 246 N+ATN+AAL+ + GHV WQLGL+MAV N+ G+ G+ LA+KHGS FVRK+F+ VV AL Sbjct: 182 NLATNVAALLLLASKGHVWWQLGLVMAVANVLGNQAGSHLALKHGSRFVRKVFIAVVLAL 241 Query: 247 ILKTGYDAFLK 257 ILKT YDAFL+ Sbjct: 242 ILKTAYDAFLR 252