BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0162.p         (93 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B5WB36.1 B5WB36_9BURK Transcriptional regulator, TetR family          110   5e-23
Q222J5.1 Q222J5_RHOFD Transcriptional regulator, TetR family          110   5e-23
F0B934.1 F0B934_9XANT Transcriptional regulator, TetR family          109   1e-22
A9BX31.1 A9BX31_DELAS Transcriptional regulator, TetR family          107   7e-22
D8N0U0.1 D8N0U0_RALSO Transcriptional regulator, TetR family          104   5e-21

>B5WB36.1 B5WB36_9BURK Transcriptional regulator, TetR family
          Length = 202

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 66/83 (79%), Gaps = 3/83 (3%)

Query: 1   VSALGSEMPRQSPEVRRAATIHIKEMIDLIARQLPDWGQPQAHQQAMALLCALIGTTVIA 60
           VSALGSEMPRQ+P VRRAAT  IKEMID++ARQLPDWGQP AH+QA+  +  ++GT V+A
Sbjct: 118 VSALGSEMPRQAPVVRRAATRRIKEMIDVVARQLPDWGQPGAHEQALLTVATMVGTMVLA 177

Query: 61  RAVDDPALSEALRA---QKFIPS 80
           RAVDDP LS++L      KF P+
Sbjct: 178 RAVDDPKLSDSLLEAALNKFAPA 200


>Q222J5.1 Q222J5_RHOFD Transcriptional regulator, TetR family
          Length = 228

 Score =  110 bits (276), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 64/74 (86%)

Query: 1   VSALGSEMPRQSPEVRRAATIHIKEMIDLIARQLPDWGQPQAHQQAMALLCALIGTTVIA 60
           +SALGSEMPRQSPEVRRAAT  IKEM+DL+ARQ PDWGQP AH++A+  +  ++GT ++A
Sbjct: 140 ISALGSEMPRQSPEVRRAATRRIKEMVDLVARQFPDWGQPGAHERALVTVATMVGTLMLA 199

Query: 61  RAVDDPALSEALRA 74
           RAV+D ALS+ALR+
Sbjct: 200 RAVNDSALSDALRS 213


>F0B934.1 F0B934_9XANT Transcriptional regulator, TetR family
          Length = 201

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 62/73 (84%)

Query: 1   VSALGSEMPRQSPEVRRAATIHIKEMIDLIARQLPDWGQPQAHQQAMALLCALIGTTVIA 60
           ++ALGSEMPRQ+PEVR+AAT  IKEMIDL ARQ PDWG PQAH +A+  +CA+ GT ++A
Sbjct: 119 IAALGSEMPRQAPEVRQAATRRIKEMIDLAARQSPDWGTPQAHARALVTVCAMAGTLMLA 178

Query: 61  RAVDDPALSEALR 73
           RAVDDPALS A+R
Sbjct: 179 RAVDDPALSAAMR 191


>A9BX31.1 A9BX31_DELAS Transcriptional regulator, TetR family
          Length = 201

 Score =  107 bits (266), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 48/73 (65%), Positives = 62/73 (84%)

Query: 1   VSALGSEMPRQSPEVRRAATIHIKEMIDLIARQLPDWGQPQAHQQAMALLCALIGTTVIA 60
           ++ALGSE  RQ+PEVRR AT HIKEM+DLIARQ PDWGQP AH++A+  L  ++G+ ++A
Sbjct: 117 LAALGSETSRQAPEVRRVATGHIKEMVDLIARQSPDWGQPAAHERALVTLSTMVGSLLLA 176

Query: 61  RAVDDPALSEALR 73
           RAVDDPALS++LR
Sbjct: 177 RAVDDPALSDSLR 189


>D8N0U0.1 D8N0U0_RALSO Transcriptional regulator, TetR family
          Length = 193

 Score =  104 bits (259), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query: 1   VSALGSEMPRQSPEVRRAATIHIKEMIDLIARQLPDWGQPQAHQQAMALLCALIGTTVIA 60
            +AL SEMPRQ+PEVR  AT  IKEMIDL++RQLPDWGQP AH+ A+  +  ++GT  +A
Sbjct: 109 TAALASEMPRQAPEVRHVATRRIKEMIDLVSRQLPDWGQPSAHEHALVTVAMMVGTLTLA 168

Query: 61  RAVDDPALSEALR 73
           RAVDDP LS+ALR
Sbjct: 169 RAVDDPKLSDALR 181