BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0155.p         (313 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C8WDP8.1 C8WDP8_ZYMMN Transcriptional regulator, LysR family          246   4e-63
A8TMV9.1 A8TMV9_9PROT Regulatory protein, LysR:LysR, substrate-b...   245   5e-63
D1RTF3.1 D1RTF3_SEROD Transcriptional regulatory protein              231   1e-58
C6DER6.1 C6DER6_PECCP Transcriptional regulator, LysR family          227   2e-57
C1DR78.1 C1DR78_AZOVD Regulatory protein, LysR family                 227   2e-57

>C8WDP8.1 C8WDP8_ZYMMN Transcriptional regulator, LysR family
          Length = 331

 Score =  246 bits (627), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 125/187 (66%), Positives = 142/187 (75%), Gaps = 13/187 (6%)

Query: 1   MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60
           MDSL SLNAFV AAEARSFT AG QLGVSSSA+GK+IARLE RLGVRLFHRSTR++TLTP
Sbjct: 1   MDSLGSLNAFVHAAEARSFTTAGKQLGVSSSAIGKAIARLEGRLGVRLFHRSTRTITLTP 60

Query: 61  EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120
           EG  FLERCRRIF+EVEAAE E + + GAP GKLR+S+P+VGMLMMP +SAF        
Sbjct: 61  EGGLFLERCRRIFSEVEAAELEISQTRGAPHGKLRISLPLVGMLMMPTISAFM------- 113

Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180
                 R  P IEL+LDFTDRLVDVI EGFDAV+R+GE  DSRL+ R LG F ++L  S 
Sbjct: 114 ------RLWPNIELDLDFTDRLVDVIDEGFDAVIRTGEINDSRLMTRMLGSFNYQLVGSA 167

Query: 181 AYLKRAG 187
            Y    G
Sbjct: 168 DYFAEHG 174


>A8TMV9.1 A8TMV9_9PROT Regulatory protein, LysR:LysR, substrate-binding
          Length = 305

 Score =  245 bits (626), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 132/222 (59%), Positives = 158/222 (71%), Gaps = 24/222 (10%)

Query: 1   MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60
           MDSL  LNAFVQAA+ARSFTAAG QLGVSSSA+GK++ARLEERLGVRLFHRSTR++ LTP
Sbjct: 1   MDSLGPLNAFVQAADARSFTAAGRQLGVSSSAIGKAVARLEERLGVRLFHRSTRAIALTP 60

Query: 61  EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120
           EGA FL RCRRI +E E AE E A + GAPRG+L VS+P+ G+LMMPA+SAF        
Sbjct: 61  EGALFLRRCRRILSEAEDAELEIAQTQGAPRGRLNVSLPLAGILMMPAISAFM------- 113

Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180
                  A+PEIELELDF+DRLVDVI EGFDAV+R+GE  DSRL++R LG F+ RL  SP
Sbjct: 114 ------HAYPEIELELDFSDRLVDVIDEGFDAVIRAGEIGDSRLMSRTLGTFQLRLVGSP 167

Query: 181 AYLKRAGX-------AAHA----RRSAAARLPASPLRHQRQA 211
            Y    G          HA    R + + +L   PL+H+ +A
Sbjct: 168 VYFASKGYPQNPDDLKQHACLQHRYATSGKLERWPLQHKGEA 209


>D1RTF3.1 D1RTF3_SEROD Transcriptional regulatory protein
          Length = 299

 Score =  231 bits (589), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/187 (64%), Positives = 141/187 (75%), Gaps = 13/187 (6%)

Query: 1   MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60
           MDSL+ + AFVQ AE RSF+ AG QLGVSSSAVGKS+AR+EERL VRLFHRSTRSVTLT 
Sbjct: 1   MDSLSGILAFVQVAETRSFSDAGRQLGVSSSAVGKSVARMEERLEVRLFHRSTRSVTLTA 60

Query: 61  EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120
           EGA FLERCRRI AE+ AAE E A +  APRGKLR+S+P+V  LMMP L+AF        
Sbjct: 61  EGALFLERCRRILAEIAAAELELADTRAAPRGKLRISLPLVSGLMMPVLTAFM------- 113

Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180
                   +P+IEL++DF+DRLVD++ EGFDAVVR+GE  DSRLV+R LG F   L ASP
Sbjct: 114 ------HRYPDIELDVDFSDRLVDIVEEGFDAVVRTGEPADSRLVSRRLGVFELVLVASP 167

Query: 181 AYLKRAG 187
            YLKR G
Sbjct: 168 DYLKRRG 174


>C6DER6.1 C6DER6_PECCP Transcriptional regulator, LysR family
          Length = 298

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/187 (62%), Positives = 137/187 (73%), Gaps = 13/187 (6%)

Query: 1   MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60
           MDSLN    FVQ AE RSF AAG  LGVS+SAVGKS+ARLEE+LGVRLFHRSTRS+TLT 
Sbjct: 1   MDSLNGFMVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSITLTA 60

Query: 61  EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120
           EG+ FL R RRI AE+EAAE E + +   PRG+LRVS+P+V  L++P L  F        
Sbjct: 61  EGSLFLARSRRILAEIEAAELELSQTKAVPRGRLRVSLPLVSSLVLPVLGEFM------- 113

Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180
                 R +PEIEL+LDFTDR+VDVI EGFDAVVR+G+ VDSRL AR LG FRF + A+P
Sbjct: 114 ------REYPEIELDLDFTDRMVDVIEEGFDAVVRTGDPVDSRLTARRLGTFRFLVVAAP 167

Query: 181 AYLKRAG 187
            YL R G
Sbjct: 168 DYLARYG 174


>C1DR78.1 C1DR78_AZOVD Regulatory protein, LysR family
          Length = 309

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 120/187 (64%), Positives = 135/187 (72%), Gaps = 13/187 (6%)

Query: 1   MDSLNSLNAFVQAAEARSFTAAGHQLGVSSSAVGKSIARLEERLGVRLFHRSTRSVTLTP 60
           MDSLN    FVQ AE RSF AAG  LGVS+SAVGKS+ARLEE+LGVRLFHRSTRSVTLT 
Sbjct: 1   MDSLNGFVVFVQVAETRSFVAAGRLLGVSASAVGKSVARLEEKLGVRLFHRSTRSVTLTA 60

Query: 61  EGAAFLERCRRIFAEVEAAEQEFAHSLGAPRGKLRVSMPIVGMLMMPALSAFXIVGMLMM 120
           EG  FLER RRI AE+EAAE E + +  APRG+LRVS+P+V  L++P L  F        
Sbjct: 61  EGTLFLERSRRILAEIEAAELELSQATAAPRGRLRVSLPLVSSLVLPVLGEFM------- 113

Query: 121 PALRAARAHPEIELELDFTDRLVDVIAEGFDAVVRSGEAVDSRLVARPLGKFRFRLAASP 180
                 R +PEIEL+LDFTDR+VDVI EGFDAVVR+GE  DSRL AR LG FR  L ASP
Sbjct: 114 ------REYPEIELDLDFTDRMVDVIEEGFDAVVRTGEPTDSRLTARRLGTFRSVLVASP 167

Query: 181 AYLKRAG 187
            YL   G
Sbjct: 168 GYLDLRG 174