BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0132.p (518 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1JEM1.1 B1JEM1_PSEPW Transcriptional regulator, NifA subfamily,... 708 0.0 B2JPE5.1 B2JPE5_BURP8 Transcriptional regulator, NifA subfamily,... 704 0.0 D8IWI6.1 D8IWI6_HERSS Sigma-54 dependent transcription regulator... 704 0.0 Q8GAZ3.1 Q8GAZ3_BURST NtrC/NifA family homolog regulator 702 0.0 Q3K764.1 Q3K764_PSEPF Nitric oxide reductase sigma-54-dependent ... 698 0.0 >B1JEM1.1 B1JEM1_PSEPW Transcriptional regulator, NifA subfamily, Fis Family Length = 516 Score = 708 bits (1827), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/518 (68%), Positives = 419/518 (80%), Gaps = 7/518 (1%) Query: 1 MLDALIPLMADLSRELHDSERYRRLLDTLRMLFPCDAAALLRLDGEILVPLAINGLSSDT 60 +L AL+PL++DLSR+L + ERYRRLL +R L PCDAAALLRLDGE LVPLA++GLS+DT Sbjct: 6 LLTALLPLVSDLSRDLPEEERYRRLLQAMRGLLPCDAAALLRLDGEWLVPLAVDGLSADT 65 Query: 61 LGRRFRVSEHPRFRVLLSNVPPTRFPANSSLPDPYDGLVEAHSGELHVHDCMGCQISMNG 120 LGRRF+VSEHPRF+VLLS PTRFP++S LPDPYDGLV AH +LHVHDCMGC + ++ Sbjct: 66 LGRRFKVSEHPRFQVLLSRAEPTRFPSDSQLPDPYDGLVNAHDVDLHVHDCMGCPLMVDE 125 Query: 121 RPWGLLTLDALGPGRFDSVDTASLQAFASLAAATVNVAERIHNLAETSEQERQRAEAYRL 180 RPWGL+TLDAL PG+F S++ +LQAFASLAAATV VAERI +LA +E E QRAE YR Sbjct: 126 RPWGLVTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDEHQRAEIYRQ 185 Query: 181 AANQSRRELIGQSPAHKRMMKEVRLAGPSNMTVLITGETGTGKELVANAIHAASPRARKP 240 A+ Q + ELIGQSPAHKR++ E+RL G S++TVLITGETG GKELVA A+H AS RA KP Sbjct: 186 ASGQDK-ELIGQSPAHKRLLDEIRLVGGSDLTVLITGETGVGKELVAQALHQASHRANKP 244 Query: 241 IISLNCAALPETLVESELFGHVRGAFSGAVSDRRGKFELADGGTLFLDEVGELSLTVQAK 300 +ISLNCAALP+TLVESELFGHVRGAF+GA +RRGKFELA+GGTLFLDEVGEL L VQAK Sbjct: 245 LISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDEVGELPLAVQAK 304 Query: 301 LLRALQSGQIQRVGSDEEHKVDVRVIAATNRDLEEEVRLGRYRSDFYHRLSVYPLAVPPL 360 LLR LQSGQ+QR+GSD EH VDVR+IAATNRDL EVR G YR+DFYHRLSVYPL VPPL Sbjct: 305 LLRVLQSGQLQRLGSDREHTVDVRLIAATNRDLAAEVRNGNYRADFYHRLSVYPLQVPPL 364 Query: 361 RERGHDILLISGFFLEENRFRLGLLSLRLATDAQEVLLNYRWPGNVRELEHVIARTALKA 420 RERG D+LL++G+FLE+NR RLGL SLRL+ +AQ LL Y WPGNVRELEH+I R+ALKA Sbjct: 365 RERGRDVLLLAGYFLEQNRSRLGLNSLRLSNEAQSALLAYDWPGNVRELEHLIGRSALKA 424 Query: 421 LGKHPERPRILTLAAEDFDLSNEKANALSSHEGLHEQQVQTELDLQNASGLRDAVSAYER 480 LG+HP+RPRILTL A D DL + E GLR+AV Y+R Sbjct: 425 LGQHPDRPRILTLQASDLDLRTVAGGVQAPSPAPLPAPSLAE------GGLREAVDGYQR 478 Query: 481 RLVSACLARNGGNVASAARELGVDRANLNRMAKRLGLK 518 +++ ACL R+ N A+AARELG+DRANLNR+A+RLGL+ Sbjct: 479 QIIDACLQRHQDNWAAAARELGLDRANLNRLARRLGLR 516 >B2JPE5.1 B2JPE5_BURP8 Transcriptional regulator, NifA subfamily, Fis Family Length = 532 Score = 704 bits (1817), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/518 (70%), Positives = 419/518 (80%), Gaps = 3/518 (0%) Query: 1 MLDALIPLMADLSRELHDSERYRRLLDTLRMLFPCDAAALLRLDGEILVPLAINGLSSDT 60 +LDALIPL+ DLSR+L + ERYRRLL TLR LFP DAAALLRLD +ILVPLAI+GL+ DT Sbjct: 18 VLDALIPLVEDLSRDLPERERYRRLLTTLRTLFPGDAAALLRLDDDILVPLAIDGLTGDT 77 Query: 61 LGRRFRVSEHPRFRVLLSNVPPTRFPANSSLPDPYDGLVEAHSGELHVHDCMGCQISMNG 120 LGRRFRVS+HPRF LLS+ PTRFPA+S LPDPYDGLV+ SG L VHDC+GC + + G Sbjct: 78 LGRRFRVSDHPRFEALLSSEHPTRFPAHSELPDPYDGLVQGVSGHLEVHDCLGCPLLIGG 137 Query: 121 RPWGLLTLDALGPGRFDSVDTASLQAFASLAAATVNVAERIHNLAETSEQERQRAEAYRL 180 RPWGLLTLD+L P RFDS+D +LQAF SLAAATV+VAERI L +E+ERQRAEAYR Sbjct: 138 RPWGLLTLDSLDPERFDSIDMNTLQAFLSLAAATVSVAERIDTLERNTEEERQRAEAYRQ 197 Query: 181 AANQSRRELIGQSPAHKRMMKEVRLAGPSNMTVLITGETGTGKELVANAIHAASPRARKP 240 A+ QS REL+G S AH+++M E+R+ S++TVLITGETG GKELVANAIH SPRA KP Sbjct: 198 ASGQSSRELVGSSTAHQQLMNEIRVVANSDLTVLITGETGVGKELVANAIHTGSPRANKP 257 Query: 241 IISLNCAALPETLVESELFGHVRGAFSGAVSDRRGKFELADGGTLFLDEVGELSLTVQAK 300 +ISLNCAALP+TLVESELFGHVRGAFSGA SDRRGKFELADGGTLFLDEVGEL L VQAK Sbjct: 258 MISLNCAALPDTLVESELFGHVRGAFSGASSDRRGKFELADGGTLFLDEVGELPLGVQAK 317 Query: 301 LLRALQSGQIQRVGSDEEHKVDVRVIAATNRDLEEEVRLGRYRSDFYHRLSVYPLAVPPL 360 LLR LQ+GQ+QR+GSD EHKVDVR+IAATNRDL EEVR GR+R+D YHRLSVYPL VPPL Sbjct: 318 LLRVLQNGQLQRIGSDSEHKVDVRLIAATNRDLAEEVRDGRFRADLYHRLSVYPLRVPPL 377 Query: 361 RERGHDILLISGFFLEENRFRLGLLSLRLATDAQEVLLNYRWPGNVRELEHVIARTALKA 420 RERG D+LL++GFFLEENR RLGLLS+RL DAQ LL+Y WPGNVRELEH+I R+A KA Sbjct: 378 RERGRDVLLLAGFFLEENRARLGLLSIRLGQDAQTALLSYSWPGNVRELEHMIGRSAFKA 437 Query: 421 LGKHPERPRILTLAAEDFDLSNEKANALSSHEGLHEQQVQTELDLQNASGLRDAVSAYER 480 L +HPERPRILTL A D +S +++ + NA+ R AV+AYER Sbjct: 438 LSRHPERPRILTLTAADLGMSASNGGEVAATA---SNAGAADAGAANAADFRSAVTAYER 494 Query: 481 RLVSACLARNGGNVASAARELGVDRANLNRMAKRLGLK 518 LVS L RN N A+ AR LG+DRANLNR+AKRLGLK Sbjct: 495 TLVSDALERNNHNWAAVARSLGMDRANLNRLAKRLGLK 532 >D8IWI6.1 D8IWI6_HERSS Sigma-54 dependent transcription regulator (Nitric oxide sensor) protein Length = 526 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/525 (70%), Positives = 438/525 (83%), Gaps = 11/525 (2%) Query: 1 MLDALIPLMADLSRELHDSERYRRLLDTLRMLFPCDAAALLRLDGEILVPLAINGLSSDT 60 +LDAL+PL+ADLSRE+ D ERYRRLL TLR LFPCDAAALLRL+G++LVPLAI+GLSSDT Sbjct: 6 LLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDGLSSDT 65 Query: 61 LGRRFRVSEHPRFRVLLSNVPPTRFPANSSLPDPYDGLVEA----HSGELHVHDCMGCQI 116 LGRRFR++EHPRF +LL N PTRF A+S LPDPYDGLV+ HSGEL VHDCMGC + Sbjct: 66 LGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDCMGCAL 125 Query: 117 SMNGRPWGLLTLDALGPGRFDSVDTASLQAFASLAAATVNVAERIHNLAETSEQERQRAE 176 ++NGR WGL+TLDALG GRFD VD SLQAFA+LAAATVNVAERI +LA+ +Q +QRAE Sbjct: 126 TVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQAQQRAE 185 Query: 177 AYRLAANQSR--RELIGQSPAHKRMMKEVRLAGPSNMTVLITGETGTGKELVANAIHAAS 234 AYRL QS+ RELIGQSPAH+++M+E+ +A PS+MTVL+ GETGTGKELVA+A+HAAS Sbjct: 186 AYRLGLEQSQGQRELIGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHALHAAS 245 Query: 235 PRARKPIISLNCAALPETLVESELFGHVRGAFSGAVSDRRGKFELADGGTLFLDEVGELS 294 PRA KP+ISLNCAALP+TLVESELFGHVRGAFSGAV+DRRGKFE+ADGGTLFLDEVGEL Sbjct: 246 PRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELP 305 Query: 295 LTVQAKLLRALQSGQIQRVGSDEEHKVDVRVIAATNRDLEEEVRLGRYRSDFYHRLSVYP 354 L VQAKLLR LQSGQ+QRVGSD EH+VDVR+IAATNRDL +EV+ G +R+DFYHRLSV+P Sbjct: 306 LAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHRLSVFP 365 Query: 355 LAVPPLRERGHDILLISGFFLEENRFRLGLLSLRLATDAQEVLLNYRWPGNVRELEHVIA 414 + VPPLRERG D+LL++G+FLE+NR RLGL SLRL+ DAQ LL+Y WPGN+RELEH+I Sbjct: 366 IRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRELEHLIG 425 Query: 415 RTALKALGKHPERPRILTLAAEDFDLSNEKANALSSHEGLHEQQVQTELDLQNASG-LRD 473 R+AL++L H RP ILTL A +L +++ E + E ASG LRD Sbjct: 426 RSALRSLATHRTRPTILTLDAAALELPAPSLATVAA----AEPSLPAESTPAQASGSLRD 481 Query: 474 AVSAYERRLVSACLARNGGNVASAARELGVDRANLNRMAKRLGLK 518 A+ YER+LVSA L R+GGN+A+ ARELGVDRANLNR+AKRLGL+ Sbjct: 482 ALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 >Q8GAZ3.1 Q8GAZ3_BURST NtrC/NifA family homolog regulator Length = 532 Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/518 (69%), Positives = 415/518 (80%), Gaps = 3/518 (0%) Query: 1 MLDALIPLMADLSRELHDSERYRRLLDTLRMLFPCDAAALLRLDGEILVPLAINGLSSDT 60 +LDALIPL+ DLSR+L + ERYRRLL TLR LFP DAAALLRLD + LVPLAI+GLS DT Sbjct: 18 VLDALIPLVEDLSRDLPERERYRRLLTTLRTLFPGDAAALLRLDDDTLVPLAIDGLSGDT 77 Query: 61 LGRRFRVSEHPRFRVLLSNVPPTRFPANSSLPDPYDGLVEAHSGELHVHDCMGCQISMNG 120 LGRRFRVS+HPRF LLS+ PTRFPA S LPDPYDGLV+ SG L VHDC+GC + + G Sbjct: 78 LGRRFRVSDHPRFEALLSSEEPTRFPAGSDLPDPYDGLVQGVSGHLEVHDCLGCPLLIGG 137 Query: 121 RPWGLLTLDALGPGRFDSVDTASLQAFASLAAATVNVAERIHNLAETSEQERQRAEAYRL 180 RPWGLLTLD+L P RFDS+D +LQAF SLAAATV+VAERI L +E+ERQRAEAYR Sbjct: 138 RPWGLLTLDSLDPERFDSIDMNTLQAFLSLAAATVSVAERIDTLERNTEEERQRAEAYRQ 197 Query: 181 AANQSRRELIGQSPAHKRMMKEVRLAGPSNMTVLITGETGTGKELVANAIHAASPRARKP 240 A+ QS RELIG S AH++++ E+R+ S +TVL+TGETG GKELVANAIH+ SPRA KP Sbjct: 198 ASGQSSRELIGSSAAHQQLVNEIRVVANSELTVLVTGETGVGKELVANAIHSGSPRANKP 257 Query: 241 IISLNCAALPETLVESELFGHVRGAFSGAVSDRRGKFELADGGTLFLDEVGELSLTVQAK 300 +ISLNCAALP+TLVESELFGHVRGAFSGA SDRRGKFELADGGTLFLDEVGEL + VQAK Sbjct: 258 MISLNCAALPDTLVESELFGHVRGAFSGASSDRRGKFELADGGTLFLDEVGELPVGVQAK 317 Query: 301 LLRALQSGQIQRVGSDEEHKVDVRVIAATNRDLEEEVRLGRYRSDFYHRLSVYPLAVPPL 360 LLR LQ+GQ+QR+GSD EHKVDVR+IAATNRDL EEVR GR+R+D YHRLSVYPL VPPL Sbjct: 318 LLRVLQNGQLQRIGSDSEHKVDVRLIAATNRDLAEEVRAGRFRADLYHRLSVYPLRVPPL 377 Query: 361 RERGHDILLISGFFLEENRFRLGLLSLRLATDAQEVLLNYRWPGNVRELEHVIARTALKA 420 RERG D+LL++G+FLEENR RLGLLS+RL DAQ LL+Y WPGNVRELEH+I R+A KA Sbjct: 378 RERGRDVLLLAGYFLEENRARLGLLSIRLGQDAQTALLSYGWPGNVRELEHMIGRSAFKA 437 Query: 421 LGKHPERPRILTLAAEDFDLSNEKANALSSHEGLHEQQVQTELDLQNASGLRDAVSAYER 480 L +H ERPRILTL A D +S L + L T D A+ R V+AYER Sbjct: 438 LSRHRERPRILTLTAADLGMSANNGGELPAAASL---SASTGADEVTATDFRSTVTAYER 494 Query: 481 RLVSACLARNGGNVASAARELGVDRANLNRMAKRLGLK 518 LVS L RN N A+ AR LG+DRANLNR+A+RLGLK Sbjct: 495 TLVSDALERNNHNWAAVARALGMDRANLNRLARRLGLK 532 >Q3K764.1 Q3K764_PSEPF Nitric oxide reductase sigma-54-dependent transcriptional regulator Length = 517 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 353/518 (68%), Positives = 416/518 (80%), Gaps = 6/518 (1%) Query: 1 MLDALIPLMADLSRELHDSERYRRLLDTLRMLFPCDAAALLRLDGEILVPLAINGLSSDT 60 +L AL+PL++DLSREL + ERYRRLL+ +R L PCDAAALLRLDGE LVPLA++GLS+DT Sbjct: 6 LLTALLPLVSDLSRELPEGERYRRLLEAMRALLPCDAAALLRLDGEWLVPLAVDGLSTDT 65 Query: 61 LGRRFRVSEHPRFRVLLSNVPPTRFPANSSLPDPYDGLVEAHSGELHVHDCMGCQISMNG 120 LGRRF+VSEHPRF VLL+ PTRF A+S LPDPYDGLV+ L VHDC+GC + ++ Sbjct: 66 LGRRFKVSEHPRFEVLLAGEGPTRFAADSDLPDPYDGLVDGLDDHLEVHDCLGCPLFVDE 125 Query: 121 RPWGLLTLDALGPGRFDSVDTASLQAFASLAAATVNVAERIHNLAETSEQERQRAEAYRL 180 + WGL+TLDAL P RF+ ++ +LQAFASLA+ATVN AERI LA +E E QRAE YR Sbjct: 126 KLWGLITLDALDPERFEPIELDALQAFASLASATVNAAERIERLATRAEDEHQRAEVYRQ 185 Query: 181 AANQSRRELIGQSPAHKRMMKEVRLAGPSNMTVLITGETGTGKELVANAIHAASPRARKP 240 A+ Q RE+IGQS AHKR+++E+ L G S++TVLITGETG GKELVA AIHAAS RA KP Sbjct: 186 ASGQQNREMIGQSKAHKRLVEEINLVGGSDLTVLITGETGVGKELVAQAIHAASKRADKP 245 Query: 241 IISLNCAALPETLVESELFGHVRGAFSGAVSDRRGKFELADGGTLFLDEVGELSLTVQAK 300 IISLNCAALP+TLVESELFGHVRGAF+GA SDRRGKFELA+GGTLFLDEVGELSLTVQAK Sbjct: 246 IISLNCAALPDTLVESELFGHVRGAFTGATSDRRGKFELANGGTLFLDEVGELSLTVQAK 305 Query: 301 LLRALQSGQIQRVGSDEEHKVDVRVIAATNRDLEEEVRLGRYRSDFYHRLSVYPLAVPPL 360 LLR LQSGQ+QR+GSD+EH+VDVR+IAATNRDL EEVR GRYR+DFYHRLSVYPL VP L Sbjct: 306 LLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDLAEEVRSGRYRADFYHRLSVYPLRVPAL 365 Query: 361 RERGHDILLISGFFLEENRFRLGLLSLRLATDAQEVLLNYRWPGNVRELEHVIARTALKA 420 R+RG D+LL+SG+FLE+NR R+GL SLRL +DAQE LL Y WPGNVRELEH+I R+ALKA Sbjct: 366 RDRGRDVLLLSGYFLEQNRSRMGLNSLRLNSDAQEALLTYTWPGNVRELEHLIGRSALKA 425 Query: 421 LGKHPERPRILTLAAEDFDLSNEKANALSSHEGLHEQQVQTELDLQNASGLRDAVSAYER 480 LG RP+IL+L+A D DL E + + L L + LR A Y+R Sbjct: 426 LGNCKVRPKILSLSAMDLDLPREVVD-----NSPMPSEATAALPLISGD-LRTATEQYQR 479 Query: 481 RLVSACLARNGGNVASAARELGVDRANLNRMAKRLGLK 518 +L+SA L RN N ASAARELG+DRANL RMAKRLG+K Sbjct: 480 QLISAALERNQDNWASAARELGLDRANLGRMAKRLGMK 517