BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0110.p         (62 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

F1VW71.1 F1VW71_9BURK Type cbb3 cytochrome oxidase biogenesis pr...    85   3e-15
A4G5L7.1 A4G5L7_HERAR Putative Cytochrome oxidase maturation pro...    77   9e-13
D8J1B7.1 D8J1B7_HERSS Nitrogen fixation protein                        74   5e-12
A6SYH3.1 A6SYH3_JANMA Nitrogen fixation protein FixS                   70   9e-11

>F1VW71.1 F1VW71_9BURK Type cbb3 cytochrome oxidase biogenesis protein
          CcoS, involved in heme b insertion
          Length = 59

 Score = 85.1 bits (209), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/50 (82%), Positives = 44/50 (88%)

Query: 1  MEALYLLVPLSIAVVFAAIWLFFRMSDDGQFDDLVSPGWRILQDDDRAPA 50
          MEAL+LLVPLSI VVFAAIW FF  SD+GQFDDLVSPGWR+LQDDDR  A
Sbjct: 1  MEALFLLVPLSIGVVFAAIWFFFGASDNGQFDDLVSPGWRVLQDDDRPSA 50


>A4G5L7.1 A4G5L7_HERAR Putative Cytochrome oxidase maturation protein
          cbb3-type
          Length = 50

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 40/47 (85%)

Query: 1  MEALYLLVPLSIAVVFAAIWLFFRMSDDGQFDDLVSPGWRILQDDDR 47
          MEALYLL+PLSI +VF AIW+FFR SD GQFDDL  PG RILQDDDR
Sbjct: 1  MEALYLLIPLSILIVFLAIWVFFRASDSGQFDDLKGPGARILQDDDR 47


>D8J1B7.1 D8J1B7_HERSS Nitrogen fixation protein
          Length = 57

 Score = 74.3 bits (181), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 41/57 (71%)

Query: 1  MEALYLLVPLSIAVVFAAIWLFFRMSDDGQFDDLVSPGWRILQDDDRAPADESSIGA 57
          MEALYLL+PLS  +VF AIW+FFR SD GQFDDL  P  RIL DDD A   E S GA
Sbjct: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDDAAVPQEPSGGA 57


>A6SYH3.1 A6SYH3_JANMA Nitrogen fixation protein FixS
          Length = 50

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 37/48 (77%)

Query: 1  MEALYLLVPLSIAVVFAAIWLFFRMSDDGQFDDLVSPGWRILQDDDRA 48
          MEALYLL+PLS  +VF AIWLFF+ SD GQF+DL  P  RILQDDD  
Sbjct: 1  MEALYLLIPLSTGLVFFAIWLFFKASDSGQFEDLQGPAERILQDDDNT 48