BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0108.p (204 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6SYH5.1 A6SYH5_JANMA Cb-type cytochrome c oxidase subunit II EC... 375 e-102 A4G5L4.1 A4G5L4_HERAR Cytochrome c oxidase cbb3-type, monoheme s... 372 e-101 F1W410.1 F1W410_9BURK Cytochrome c oxidase subunit CcoO 363 8e-99 D8J1B5.1 D8J1B5_HERSS Cbb3-type cytochrome c oxidase, subunit II... 337 5e-91 E8U048.1 E8U048_ALIDB Cytochrome c oxidase, cbb3-type, subunit II 328 3e-88 >A6SYH5.1 A6SYH5_JANMA Cb-type cytochrome c oxidase subunit II EC=1.9.3.1 Length = 204 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 178/203 (87%), Positives = 185/203 (91%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSHEWIEKNPWLLIALV LVVSVGG VEIVPLFFQ+STTEP+AGLKPYS LRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSALRLAGRDV 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y REGCYNCHSQMIRPFRAETERYGHYSVAGEFVYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WHR HL+ PRD+VPESNMPGYPWL KT+L PN I P+MRAL RLGVPYTDEEIKAAPAEL Sbjct: 121 WHRTHLDRPRDLVPESNMPGYPWLVKTKLVPNDIMPRMRALQRLGVPYTDEEIKAAPAEL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKTR 203 KTE+DALVAYLQGLG IK R Sbjct: 181 DGKTEQDALVAYLQGLGILIKAR 203 >A4G5L4.1 A4G5L4_HERAR Cytochrome c oxidase cbb3-type, monoheme subunit EC=1.9.3.1 Length = 204 Score = 372 bits (954), Expect = e-101, Method: Compositional matrix adjust. Identities = 175/203 (86%), Positives = 185/203 (91%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSHEWIEKNPWLLIALV LVVSVGG VEIVPLFFQ+STTEP+AGLKPYSPLRLAGRD+ Sbjct: 1 MKFSHEWIEKNPWLLIALVTLVVSVGGAVEIVPLFFQKSTTEPVAGLKPYSPLRLAGRDI 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y REGCYNCHSQMIRPFRAETERYGHYSVAGEFVYD PFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YTREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGGRYSDE 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WHRIHL+NPR VVPESNMP YPWLAKT+L P I PKM AL RLGVPYT++E+KAAP EL Sbjct: 121 WHRIHLDNPRHVVPESNMPNYPWLAKTKLVPEEIIPKMNALRRLGVPYTEDEVKAAPDEL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKTR 203 KTE+DAL+AYLQGLGT IK R Sbjct: 181 VGKTEQDALIAYLQGLGTLIKAR 203 >F1W410.1 F1W410_9BURK Cytochrome c oxidase subunit CcoO Length = 204 Score = 363 bits (932), Expect = 8e-99, Method: Compositional matrix adjust. Identities = 166/204 (81%), Positives = 182/204 (89%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSH WIEKNPWLLIALV++V+S+GGLVEIVPLFFQ STTEPI GLKPYS LRL+GRD+ Sbjct: 1 MKFSHAWIEKNPWLLIALVLVVISIGGLVEIVPLFFQSSTTEPITGLKPYSALRLSGRDI 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 Y+REGCYNCHSQMIRP RAETERYGHYSVAGEFVYD PFQWGSKRTGPDLARVGARYSD+ Sbjct: 61 YVREGCYNCHSQMIRPLRAETERYGHYSVAGEFVYDRPFQWGSKRTGPDLARVGARYSDD 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WH IHLNNPRD+VPESNMPGYPWLA T+L P + KMRAL RLG PYT++E+K P L Sbjct: 121 WHAIHLNNPRDLVPESNMPGYPWLATTKLVPGDVTAKMRALQRLGTPYTEQEVKDGPGTL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKTRN 204 KTE+DAL+AYLQGLGT IKTRN Sbjct: 181 EGKTEQDALIAYLQGLGTLIKTRN 204 >D8J1B5.1 D8J1B5_HERSS Cbb3-type cytochrome c oxidase, subunit II transmembrane protein EC=1.9.3.1 Length = 204 Score = 337 bits (864), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 166/202 (82%), Positives = 179/202 (88%) Query: 1 MKFSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDV 60 MKFSHEWIEKNPWLLI LV+LVVS+GGL EIVPLFFQ+STTEPIAGLKPYS LRLAGRDV Sbjct: 1 MKFSHEWIEKNPWLLIGLVLLVVSIGGLAEIVPLFFQKSTTEPIAGLKPYSALRLAGRDV 60 Query: 61 YIREGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDE 120 YIREGCYNCHSQMIRP RAETERYGHYSVAGE VYDHPFQWGSKRTGPDLARVG RYSDE Sbjct: 61 YIREGCYNCHSQMIRPLRAETERYGHYSVAGESVYDHPFQWGSKRTGPDLARVGTRYSDE 120 Query: 121 WHRIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAEL 180 WHR HL+NPRDVVPESNMP YPWL + +LD I +M+AL R+G PYT+E+IK APAEL Sbjct: 121 WHRAHLHNPRDVVPESNMPAYPWLEQAKLDNYDIVSRMKALKRIGDPYTEEDIKNAPAEL 180 Query: 181 ADKTEEDALVAYLQGLGTQIKT 202 KTE+DAL+AYLQGLG IK Sbjct: 181 VGKTEQDALIAYLQGLGVLIKA 202 >E8U048.1 E8U048_ALIDB Cytochrome c oxidase, cbb3-type, subunit II Length = 210 Score = 328 bits (840), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 149/199 (74%), Positives = 172/199 (86%) Query: 3 FSHEWIEKNPWLLIALVVLVVSVGGLVEIVPLFFQRSTTEPIAGLKPYSPLRLAGRDVYI 62 F+HE +E + +L+I L++LVV++GGLVEIVPLFFQ+STTE + GLKPY+PL+LAGRD+Y+ Sbjct: 12 FTHEKVETSNFLMIVLILLVVAIGGLVEIVPLFFQKSTTEAVQGLKPYTPLQLAGRDIYV 71 Query: 63 REGCYNCHSQMIRPFRAETERYGHYSVAGEFVYDHPFQWGSKRTGPDLARVGARYSDEWH 122 REGCYNCHSQMIRPFRAET RYGHYSVAGEFVYDHPFQWGSKRTGPDL RVG +YSDEWH Sbjct: 72 REGCYNCHSQMIRPFRAETLRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWH 131 Query: 123 RIHLNNPRDVVPESNMPGYPWLAKTRLDPNSIAPKMRALHRLGVPYTDEEIKAAPAELAD 182 RIHLNNPRDVVPESNMP YPWL KT+LDP AP M+AL +GVPYTDEEI A ++ Sbjct: 132 RIHLNNPRDVVPESNMPAYPWLEKTQLDPAVSAPHMKALRTVGVPYTDEEIAGAAEQVKG 191 Query: 183 KTEEDALVAYLQGLGTQIK 201 KTE DALVAYLQ LG ++ Sbjct: 192 KTEMDALVAYLQVLGRTLR 210