BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0061.p         (107 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8HNV1.1 B8HNV1_CYAP4 Response regulator receiver modulated digu...   112   3e-23
F2KA57.1 F2KA57_PSEBR Putative diguanylate cyclase                    108   3e-22
B2J8F5.1 B2J8F5_NOSP7 Response regulator receiver modulated digu...   104   4e-21
A4G5V3.1 A4G5V3_HERAR Putative uncharacterized protein                103   6e-21
B4VMP7.1 B4VMP7_9CYAN GGDEF domain protein                            103   7e-21

>B8HNV1.1 B8HNV1_CYAP4 Response regulator receiver modulated diguanylate
           cyclase
          Length = 337

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/101 (54%), Positives = 70/101 (69%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTGIVTVSVGV 60
           + RPGDL +RYGGEEFAI+LPNT   G   VAE I   V++LN+PH ++P GIVT+S+GV
Sbjct: 236 LKRPGDLVSRYGGEEFAIVLPNTSADGTFKVAEAIRQQVQSLNLPHNQSPHGIVTLSLGV 295

Query: 61  QASVPTKTCNLLDLVSAADKALYTAKARGRNQVCSADDDIP 101
            A  P    +   L++ AD+ALY AKARGRNQV    D +P
Sbjct: 296 AALTPIVGFSPDYLIAIADRALYLAKARGRNQVVYLQDIVP 336


>F2KA57.1 F2KA57_PSEBR Putative diguanylate cyclase
          Length = 522

 Score =  108 bits (270), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 54/98 (55%), Positives = 67/98 (68%), Gaps = 1/98 (1%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTGIVTVSVGV 60
           + RPGDL+ RYGGEEF +LLPNTD  GA  VA++I   VRA+NI HG +P GIVT+S G+
Sbjct: 421 IKRPGDLAVRYGGEEFTVLLPNTDSTGAAKVAQQILEAVRAMNIEHGDHPLGIVTISAGI 480

Query: 61  QASVPT-KTCNLLDLVSAADKALYTAKARGRNQVCSAD 97
             S P+ +      L+ AAD  LY AK  GRN+ CSAD
Sbjct: 481 TTSQPSGEDVTPAMLIKAADAFLYLAKNTGRNRWCSAD 518


>B2J8F5.1 B2J8F5_NOSP7 Response regulator receiver modulated diguanylate
           cyclase EC=3.1.1.61
          Length = 322

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 65/93 (69%), Gaps = 1/93 (1%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTG-IVTVSVG 59
           + RPGDL ARYGGEEFA++LPNTD +GA  VA+KIC  VR L IPH  +     VT+S G
Sbjct: 216 IKRPGDLVARYGGEEFAVILPNTDTEGATHVAKKICHTVRKLAIPHENSEVSPYVTISAG 275

Query: 60  VQASVPTKTCNLLDLVSAADKALYTAKARGRNQ 92
               +P    +L ++++AAD+ALY AKA GR++
Sbjct: 276 FTTEIPQSDSDLEEMIAAADRALYQAKAAGRDR 308


>A4G5V3.1 A4G5V3_HERAR Putative uncharacterized protein
          Length = 519

 Score =  103 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 55/102 (53%), Positives = 68/102 (66%), Gaps = 6/102 (5%)

Query: 3   RPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPHGKNPTGIVTVSVGVQA 62
           R GDL ARYGGEEF ILLP TD  GA +VAE++   ++ALN+ H + P GIVT S+G+ A
Sbjct: 418 RTGDLVARYGGEEFVILLPGTDRAGAAAVAERVRLAIQALNMEHAETPDGIVTASLGIAA 477

Query: 63  SVPTKTCNL-LDLVSAADKALYTAKARGRNQVC-----SADD 98
            +P +  N    LV AAD+ALY AK  GRNQ C     SAD+
Sbjct: 478 LIPQRQQNSPQQLVHAADQALYKAKEDGRNQSCISTQASADN 519


>B4VMP7.1 B4VMP7_9CYAN GGDEF domain protein
          Length = 505

 Score =  103 bits (257), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 69/102 (67%), Gaps = 2/102 (1%)

Query: 1   MNRPGDLSARYGGEEFAILLPNTDLKGAISVAEKICAGVRALNIPH-GKNPTGIVTVSVG 59
           + RP DL ARYGGEEFA++LPNT+ KGAI VAE I  GV  L IPH G   +  VT+S+G
Sbjct: 396 VKRPADLVARYGGEEFAVILPNTNAKGAIHVAETIRQGVETLKIPHGGSESSKYVTLSLG 455

Query: 60  VQASVPTKTCNLLDLVSAADKALYTAKARGRNQVCSADDDIP 101
           V + +P    N+  L++ AD+ALY AKA GRNQ   A+  IP
Sbjct: 456 VSSLIPNSLVNVEGLINQADQALYRAKAGGRNQTV-AEYSIP 496