BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0048.p         (198 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3X7Q8.1 C3X7Q8_OXAFO ATP-dependent Clp protease proteolytic sub...   201   4e-50
A9IR54.1 CLPP_BORPD ATP-dependent Clp protease proteolytic subun...   199   2e-49
C3X1E7.1 C3X1E7_OXAFO ATP-dependent Clp protease proteolytic sub...   199   2e-49
E6PPF4.1 E6PPF4_9ZZZZ ATP-dependent Clp protease proteolytic sub...   198   3e-49
E5U693.1 E5U693_ALCXX ATP-dependent Clp protease proteolytic sub...   198   4e-49

>C3X7Q8.1 C3X7Q8_OXAFO ATP-dependent Clp protease proteolytic subunit
           EC=3.4.21.92
          Length = 207

 Score =  201 bits (511), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/117 (79%), Positives = 104/117 (88%)

Query: 3   AFSPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESE 62
           A   R L ++P V+EQSGR ERAYDIYSRLL+ERI+FLVGPV DQ+ANLIVAQLLFLESE
Sbjct: 8   ALDTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFLESE 67

Query: 63  DPDKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           +PDKDISLYINSPGG V AG+AIYDTMQFI+PQVSTLCTG AASMGA LLAAG+K +
Sbjct: 68  NPDKDISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGK 124


>A9IR54.1 CLPP_BORPD ATP-dependent Clp protease proteolytic subunit
           EC=3.4.21.92
          Length = 217

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 92/115 (80%), Positives = 102/115 (88%)

Query: 5   SPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESEDP 64
           +P  L  +P V+EQSGR ERAYDIYSRLLRER+IFLVGPV D +ANLIVAQLLFLESE+P
Sbjct: 18  TPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLIVAQLLFLESENP 77

Query: 65  DKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           DKDISLYINSPGG VYAG+AIYDTMQF++P VSTLCTG AASMGA LLAAGKK +
Sbjct: 78  DKDISLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGK 132


>C3X1E7.1 C3X1E7_OXAFO ATP-dependent Clp protease proteolytic subunit
           EC=3.4.21.92
          Length = 207

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/124 (77%), Positives = 106/124 (85%), Gaps = 5/124 (4%)

Query: 1   MPAFSPRALD-----LVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQ 55
           M  F   ALD     ++P V+EQSGR ERA+DIYSRLL+ERIIFLVGPVTDQ+ANLIVAQ
Sbjct: 1   MTQFHDSALDTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQ 60

Query: 56  LLFLESEDPDKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAG 115
           LLFLESE+P+KDISLYINSPGG V AG+AIYDTMQFIRPQVSTLCTG AASMGA LLAAG
Sbjct: 61  LLFLESENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAG 120

Query: 116 KKXR 119
            K +
Sbjct: 121 AKGK 124


>E6PPF4.1 E6PPF4_9ZZZZ ATP-dependent Clp protease proteolytic subunit
           (Endopeptidase Clp) (Caseinolytic protease) (Protease
           Ti) (Heat shock protein F21.5) EC=3.4.21.92
          Length = 202

 Score =  198 bits (504), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 103/119 (86%)

Query: 1   MPAFSPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLE 60
           M A   + L +VP V+EQSGR ERAYDIYSRLLRER+IFLVGPV DQ+ANL+VAQLLFLE
Sbjct: 1   MSAIETQNLGMVPIVIEQSGRGERAYDIYSRLLRERVIFLVGPVNDQTANLVVAQLLFLE 60

Query: 61  SEDPDKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           SE+PDKDISLYINSPGG V AGLAIYDTMQFI+P VSTLCTG AASMGA L+AAG K +
Sbjct: 61  SENPDKDISLYINSPGGSVSAGLAIYDTMQFIKPDVSTLCTGIAASMGAFLMAAGAKGK 119


>E5U693.1 E5U693_ALCXX ATP-dependent Clp protease proteolytic subunit 2
           EC=3.4.21.92
          Length = 217

 Score =  198 bits (503), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 91/115 (79%), Positives = 102/115 (88%)

Query: 5   SPRALDLVPTVVEQSGRSERAYDIYSRLLRERIIFLVGPVTDQSANLIVAQLLFLESEDP 64
           +P  L  +P V+EQSGR ERAYDIYSRLLRER+IFLVGPV D +ANL+VAQLLFLESE+P
Sbjct: 18  TPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDATANLVVAQLLFLESENP 77

Query: 65  DKDISLYINSPGGVVYAGLAIYDTMQFIRPQVSTLCTGFAASMGAILLAAGKKXR 119
           DKDISLYINSPGG VYAG+AIYDTMQF++P VSTLCTG AASMGA LLAAGKK +
Sbjct: 78  DKDISLYINSPGGSVYAGMAIYDTMQFVKPDVSTLCTGLAASMGAFLLAAGKKGK 132