BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0031.p (342 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value F1W3Y2.1 F1W3Y2_9BURK Putative uncharacterized protein 542 e-152 D8IXT0.1 D8IXT0_HERSS TRAP-type C4-dicarboxylate transport syste... 527 e-147 Q478I1.1 Q478I1_DECAR TRAP dicarboxylate transporter-DctP subunit 504 e-141 Q21XD7.1 Q21XD7_RHOFD TRAP dicarboxylate transporter-DctP subunit 504 e-140 Q89LW3.1 Q89LW3_BRAJA Bll4430 protein 462 e-128 >F1W3Y2.1 F1W3Y2_9BURK Putative uncharacterized protein Length = 339 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 263/342 (76%), Positives = 299/342 (87%), Gaps = 3/342 (0%) Query: 1 MTSQKRRSIIGALATAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFAE 60 M S RR+++GA+A +PL++ +AWAQ T+LKISHQFPGGT EGDFRDRL R FA Sbjct: 1 MFSTTRRTLLGAIAASPLFSI-PAAWAQ--TTALKISHQFPGGTATEGDFRDRLCRQFAT 57 Query: 61 GVAKRTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPGL 120 V KR+ GSLKFE+YPGSSLMK NAQFS+MRKGALD+SLVPL+YAGGE+PE NIGLMPGL Sbjct: 58 EVEKRSKGSLKFEVYPGSSLMKTNAQFSSMRKGALDMSLVPLSYAGGEMPEVNIGLMPGL 117 Query: 121 VTSYAQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVRG 180 VTSY QG WKNAEVG+EL R+L EKGI++VSWIWQAGGVASR+ PI++P DAKG+K+RG Sbjct: 118 VTSYEQGYGWKNAEVGRELNRLLLEKGIVVVSWIWQAGGVASRTIPIVEPEDAKGLKIRG 177 Query: 181 GSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRD 240 GSREMDLILK AGAAVV+LPSNEIYAAMQTGAMDAA+TSSTS ISFRLEEV+K+LTTGR Sbjct: 178 GSREMDLILKAAGAAVVSLPSNEIYAAMQTGAMDAALTSSTSLISFRLEEVSKSLTTGRG 237 Query: 241 KAYWYMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGAK 300 KAYW+MFEPLM+SK VF+KLSKDQQA IMAVG E+E A K+AQTDD VAAVYQK GAK Sbjct: 238 KAYWFMFEPLMMSKVVFDKLSKDQQAIIMAVGGELETMARKSAQTDDSLVAAVYQKTGAK 297 Query: 301 VVDLNAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 VVDL+ ATVKKWQ IARATAWKD+A RNA+CANLLKLAEK L Sbjct: 298 VVDLSEATVKKWQTIARATAWKDYAERNANCANLLKLAEKTL 339 >D8IXT0.1 D8IXT0_HERSS TRAP-type C4-dicarboxylate transport system, periplasmic component protein Length = 288 Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust. Identities = 255/287 (88%), Positives = 271/287 (94%) Query: 56 RMFAEGVAKRTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIG 115 RMFA+ V++RT G+LKFEIYPGSSLMK NAQFSAMRKGALD+SLVPLNYAGGEVPETNIG Sbjct: 2 RMFAQQVSERTKGALKFEIYPGSSLMKTNAQFSAMRKGALDMSLVPLNYAGGEVPETNIG 61 Query: 116 LMPGLVTSYAQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKG 175 LMPGLVTSY QG+AWKNAEVGKELAR+LAEKG++IVSWIWQAGGVASR KPI+DP+DAKG Sbjct: 62 LMPGLVTSYQQGAAWKNAEVGKELARVLAEKGVIIVSWIWQAGGVASRGKPIVDPSDAKG 121 Query: 176 MKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKAL 235 MKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSF+SFRLEEVAKAL Sbjct: 122 MKVRGGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFMSFRLEEVAKAL 181 Query: 236 TTGRDKAYWYMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQ 295 TTGRDKAYWYMFEPLMISKAVFE+L KDQQ+ IMAVGAEMEQFA KAAQ DD+AVA VYQ Sbjct: 182 TTGRDKAYWYMFEPLMISKAVFERLPKDQQSVIMAVGAEMEQFATKAAQADDIAVAQVYQ 241 Query: 296 KAGAKVVDLNAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 KAGAKVVDLNA VKKWQDIAR TAWKDFAARNA+CA LL LAEK L Sbjct: 242 KAGAKVVDLNAEVVKKWQDIARNTAWKDFAARNANCAKLLALAEKTL 288 >Q478I1.1 Q478I1_DECAR TRAP dicarboxylate transporter-DctP subunit Length = 341 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 248/338 (73%), Positives = 285/338 (84%), Gaps = 2/338 (0%) Query: 6 RRSII-GALATAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFAEGVAK 64 RR+I+ G +AT L + + WAQ A LKISHQFPGGT EGDFRDRL R F+ + K Sbjct: 5 RRNILKGMVATPALALSPNLLWAQAA-GELKISHQFPGGTATEGDFRDRLCRRFSAEITK 63 Query: 65 RTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPGLVTSY 124 RTNG+L+ +YPGSSLMK NAQFS++RKGALD++LVPL+YAGGEVPETNIGLMPG+VTSY Sbjct: 64 RTNGALRGTVYPGSSLMKTNAQFSSVRKGALDMTLVPLSYAGGEVPETNIGLMPGIVTSY 123 Query: 125 AQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVRGGSRE 184 Q +WK AE+GK LA ILA+KG+L+VSWIWQAGGVASR KPIIDP DAKG+KVRGGSRE Sbjct: 124 EQAVSWKKAEIGKALANILADKGVLVVSWIWQAGGVASRVKPIIDPEDAKGLKVRGGSRE 183 Query: 185 MDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRDKAYW 244 MD++LK+AGA V+TLPSNEIYAAMQTGA+DAAMTSSTS ISFRLEEV KALTTGR K YW Sbjct: 184 MDMVLKQAGATVLTLPSNEIYAAMQTGALDAAMTSSTSLISFRLEEVGKALTTGRGKTYW 243 Query: 245 YMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGAKVVDL 304 +MFEPL+IS+AVFEKL K QQ AIMAVGAEME +AL+ A+ DD AVAAVYQKAG K DL Sbjct: 244 FMFEPLLISRAVFEKLPKAQQDAIMAVGAEMEAYALEGARADDQAVAAVYQKAGGKAYDL 303 Query: 305 NAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 + A+VKKWQ IAR TAWKDFAA+N SCA +LKLAE L Sbjct: 304 SDASVKKWQAIARDTAWKDFAAKNESCARILKLAEATL 341 >Q21XD7.1 Q21XD7_RHOFD TRAP dicarboxylate transporter-DctP subunit Length = 338 Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust. Identities = 246/343 (71%), Positives = 288/343 (83%), Gaps = 11/343 (3%) Query: 5 KRRSII---GALA--TAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFA 59 +RR ++ G LA T P S A+AQ ++LKISHQFPGGTI EGDFRDRL R FA Sbjct: 2 QRRQLLQSMGGLAASTMPF----SLAFAQ--TSALKISHQFPGGTIKEGDFRDRLVRNFA 55 Query: 60 EGVAKRTNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPG 119 V KR+ G++KFEIYPGSSLMK NAQFS+MRKGALD++L+PL+YAGGEVPE NIGLMPG Sbjct: 56 AEVEKRSKGAMKFEIYPGSSLMKTNAQFSSMRKGALDMALIPLSYAGGEVPELNIGLMPG 115 Query: 120 LVTSYAQGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVR 179 LV SY Q +WK VG EL R+L EKGI+++SWIWQAGGVASR KP+++P DAKGMK+R Sbjct: 116 LVVSYEQAYSWKTKPVGIELTRVLQEKGIVLISWIWQAGGVASRGKPVVEPEDAKGMKIR 175 Query: 180 GGSREMDLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGR 239 GGSREMD+ILK+AGAAVV+LPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGR Sbjct: 176 GGSREMDMILKDAGAAVVSLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGR 235 Query: 240 DKAYWYMFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGA 299 AYW+MFEPLM+SKA+F+KL KDQ+ +M VGAEME+FAL+AA+ DD+ VAAVYQKAGA Sbjct: 236 TGAYWFMFEPLMMSKAIFDKLPKDQRDMLMTVGAEMEKFALEAAKKDDIDVAAVYQKAGA 295 Query: 300 KVVDLNAATVKKWQDIARATAWKDFAARNASCANLLKLAEKLL 342 KVVDL+ T+KKWQDIAR TAWKD+ A+N CA LL LA++ L Sbjct: 296 KVVDLSDGTIKKWQDIARKTAWKDYGAKNEGCAKLLALAQQTL 338 >Q89LW3.1 Q89LW3_BRAJA Bll4430 protein Length = 340 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 224/333 (67%), Positives = 271/333 (81%), Gaps = 1/333 (0%) Query: 6 RRSIIGALATAPLWTAGSSAWAQGAPTSLKISHQFPGGTINEGDFRDRLTRMFAEGVAKR 65 RR ++ AP + A A T+LKISHQFPGGTI++GDFRDRL RMFA VAKR Sbjct: 4 RRHLLATAVAAPAILRFGTGTAHAA-TTLKISHQFPGGTIDKGDFRDRLCRMFAAEVAKR 62 Query: 66 TNGSLKFEIYPGSSLMKVNAQFSAMRKGALDLSLVPLNYAGGEVPETNIGLMPGLVTSYA 125 +NG + EIYP SSL+K NAQFSAMRKGALD+SL P+ YAGGE+PETNIGLMPGLVT+Y Sbjct: 63 SNGDIAAEIYPNSSLIKTNAQFSAMRKGALDISLYPMPYAGGELPETNIGLMPGLVTTYD 122 Query: 126 QGSAWKNAEVGKELARILAEKGILIVSWIWQAGGVASRSKPIIDPADAKGMKVRGGSREM 185 QG WK VGK L+ LA+KGI++++W+WQAGG+ASRSKPI+ P DAKGMKVRGGSREM Sbjct: 123 QGMRWKKEPVGKALSDFLADKGIILLTWVWQAGGLASRSKPIVAPEDAKGMKVRGGSREM 182 Query: 186 DLILKEAGAAVVTLPSNEIYAAMQTGAMDAAMTSSTSFISFRLEEVAKALTTGRDKAYWY 245 D++L+ AGA+V+++PSNEIYAAMQTGA DAA+TSSTS ISFRLEEVAK+LT+G +YW+ Sbjct: 183 DMVLQTAGASVLSVPSNEIYAAMQTGACDAALTSSTSLISFRLEEVAKSLTSGAGASYWF 242 Query: 246 MFEPLMISKAVFEKLSKDQQAAIMAVGAEMEQFALKAAQTDDVAVAAVYQKAGAKVVDLN 305 M EPLM+SKA+F+KL K+QQ ++AVGAE+E F K AQ DDV VA VY+KAGAKV L+ Sbjct: 243 MLEPLMMSKAIFDKLPKNQQDVLLAVGAELEVFGRKGAQDDDVEVAKVYEKAGAKVSVLD 302 Query: 306 AATVKKWQDIARATAWKDFAARNASCANLLKLA 338 AATV KW+DIAR TAWKD+ A+ A+ ANLLKLA Sbjct: 303 AATVGKWRDIARDTAWKDYGAKTATAANLLKLA 335