BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0007.0018.p         (166 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T3U7.1 A6T3U7_JANMA RNA polymerase sigma-70 factor, ECF subfamily   220   5e-56
A4GA46.1 A4GA46_HERAR Putative RNA polymerase sigma factor            213   8e-54
Q47IQ3.1 Q47IQ3_DECAR Sigma-70 region 2:Sigma-70 region 4             192   2e-47
D8IXU0.1 D8IXU0_HERSS RNA polymerase sigma-E factor (Sigma-24) p...   184   4e-45
A1K8M6.1 A1K8M6_AZOSB Putative RNA polymerase sigma factor            179   2e-43

>A6T3U7.1 A6T3U7_JANMA RNA polymerase sigma-70 factor, ECF subfamily
          Length = 168

 Score =  220 bits (560), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 131/168 (77%), Gaps = 2/168 (1%)

Query: 1   MSDE-SHLLACLPRLRRYARALVGDRAGADDLVQDTMERAWQKLSSWRKGSDMRPWLFSI 59
           M DE   L+AC+PRLRRYARAL+GDR GADDLVQDTMER W+KLSSW++GSDMR WLF I
Sbjct: 1   MQDERDRLIACIPRLRRYARALLGDRTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGI 60

Query: 60  MHNLHVDQRRKPVIPTVALDDEDAL-ATPAYAPDRLVGYDLESALRLLAAEQREILLLVV 118
           MHNLHVDQ RKP +PT  LDD+  + A      D L   DLESAL  L  EQREILLLV 
Sbjct: 61  MHNLHVDQVRKPSLPTEELDDDTPIPAAHTSVSDGLEMRDLESALHSLPTEQREILLLVA 120

Query: 119 LEEMTYEEVAATLSIPLGTVMSRLSRARERLRALVEGRPRHSTLKVVK 166
           LEEM+YEEVAATL +PLGTVMSRLSRAR++LR  +EGR   S LKVVK
Sbjct: 121 LEEMSYEEVAATLGLPLGTVMSRLSRARQKLRTQMEGRAVVSLLKVVK 168


>A4GA46.1 A4GA46_HERAR Putative RNA polymerase sigma factor
          Length = 168

 Score =  213 bits (542), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 114/168 (67%), Positives = 130/168 (77%), Gaps = 2/168 (1%)

Query: 1   MSDE-SHLLACLPRLRRYARALVGDRAGADDLVQDTMERAWQKLSSWRKGSDMRPWLFSI 59
           M DE   L+AC+PRLRRYARAL+G+R GADDLVQDTMER W+KLSSW++GSDMR WLF I
Sbjct: 1   MQDERDRLIACIPRLRRYARALIGERTGADDLVQDTMERGWKKLSSWQRGSDMRAWLFGI 60

Query: 60  MHNLHVDQRRKPVIPTVALDDEDALATP-AYAPDRLVGYDLESALRLLAAEQREILLLVV 118
           MHNLH+DQ R+P I T  LDD+  L T  A   D L   DL+SAL  L  EQREILLLV 
Sbjct: 61  MHNLHIDQVRRPGIMTEVLDDDTPLPTSKATQADGLEMRDLQSALATLPPEQREILLLVA 120

Query: 119 LEEMTYEEVAATLSIPLGTVMSRLSRARERLRALVEGRPRHSTLKVVK 166
           LEEM+YEEVA TL +PLGTVMSRLSRAR++LRA +EGR     LKVVK
Sbjct: 121 LEEMSYEEVATTLGLPLGTVMSRLSRARQKLRAHMEGRTVVLPLKVVK 168


>Q47IQ3.1 Q47IQ3_DECAR Sigma-70 region 2:Sigma-70 region 4
          Length = 166

 Score =  192 bits (487), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/166 (60%), Positives = 124/166 (74%), Gaps = 3/166 (1%)

Query: 3   DESHLLACLPRLRRYARALVGDRAGADDLVQDTMERAWQKLSSWRKGSDMRPWLFSIMHN 62
           D   +LA LPRLRRYARA++GDRA ADDLVQDT+ERAW ++S WR+GSD+R WLF IMHN
Sbjct: 2   DSRAILAELPRLRRYARAMLGDRAAADDLVQDTLERAWSRISQWRQGSDLRAWLFGIMHN 61

Query: 63  LHVDQRRKPVIPTVALDDEDALATP--AYAPDRLVGYDLESALRLLAAEQREILLLVVLE 120
           L +DQ R+  +   +L DEDA   P      DRL   DLESALR L  EQREILLLV LE
Sbjct: 62  LRIDQLRRAGLAITSL-DEDAAEVPLRPTQTDRLELMDLESALRQLPDEQREILLLVALE 120

Query: 121 EMTYEEVAATLSIPLGTVMSRLSRARERLRALVEGRPRHSTLKVVK 166
           EM+Y ++A  L IP+GTVMSRLSR RERLR +++GR + + L++V+
Sbjct: 121 EMSYADIATLLGIPIGTVMSRLSRGRERLRVVMDGRQQTANLRLVR 166


>D8IXU0.1 D8IXU0_HERSS RNA polymerase sigma-E factor (Sigma-24) protein
          Length = 163

 Score =  184 bits (467), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 110/163 (67%), Positives = 125/163 (76%), Gaps = 3/163 (1%)

Query: 7   LLACLPRLRRYARALVGDRAGADDLVQDTMERAWQKLSSWRKGSDMRPWLFSIMHNLHVD 66
           +LACLPRLRRYARAL G R  ADDLVQDT+ERAWQKL SW++GS MRPWLFSIMHNLH D
Sbjct: 1   MLACLPRLRRYARALTGAREAADDLVQDTLERAWQKLDSWQRGSPMRPWLFSIMHNLHAD 60

Query: 67  QRRKPVIPTVALDDEDALATPAYAPDRLVGYDLESALRLLAAEQREILLLVVLEEMTYEE 126
            RR+    TVALD+   +     A D  V  DLE+AL+LL  EQRE+LLLVVLEEM YEE
Sbjct: 61  ARRRASPATVALDEYGEIDQAQVALDPGVLLDLETALQLLPPEQREVLLLVVLEEMRYEE 120

Query: 127 VAATLSIPLGTVMSRLSRARERLRALVEGRPRH---STLKVVK 166
           VA TL IP GTVMSRLSRARERLR +++G+      S+LKVVK
Sbjct: 121 VAVTLGIPTGTVMSRLSRARERLRRVMQGQGESSPGSSLKVVK 163


>A1K8M6.1 A1K8M6_AZOSB Putative RNA polymerase sigma factor
          Length = 166

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 120/165 (72%), Gaps = 1/165 (0%)

Query: 3   DESHLLACLPRLRRYARALVGDRAGADDLVQDTMERAWQKLSSWRKGSDMRPWLFSIMHN 62
           D + LLA LPRLRRYARALVG+RA ADDLVQDT+ERAW + + WR  + +RPWLF IMHN
Sbjct: 2   DGAALLAELPRLRRYARALVGERAAADDLVQDTLERAWTRAAQWRPENPLRPWLFGIMHN 61

Query: 63  LHVDQRRKPVIPTVALDDED-ALATPAYAPDRLVGYDLESALRLLAAEQREILLLVVLEE 121
           L +DQ R+P + T  L+DED  L   A   D L   DL++AL  L  EQR +LLLV LE 
Sbjct: 62  LRIDQLRRPGLHTRPLEDEDFELPVRATQSDALEVGDLDAALARLPEEQRAVLLLVALEG 121

Query: 122 MTYEEVAATLSIPLGTVMSRLSRARERLRALVEGRPRHSTLKVVK 166
           M YE++AATL +PLGTVMSRLSR RERLRA++   P  + L+VV+
Sbjct: 122 MRYEDIAATLGVPLGTVMSRLSRGRERLRAIMGEAPAANRLRVVR 166