BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0047.p         (133 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWG9.1 D8IWG9_HERSS Two component hybrid sensor histidine kina...   158   3e-37
Q1D5L4.1 Q1D5L4_MYXXD Sensory box sensor histidine kinase/respon...   100   5e-20
B2JNI2.1 B2JNI2_BURP8 PAS/PAC sensor hybrid histidine kinase          100   1e-19
Q08S82.1 Q08S82_STIAD Sensor protein                                   96   1e-18
E3FW51.1 E3FW51_STIAD Sensor protein                                   94   7e-18

>D8IWG9.1 D8IWG9_HERSS Two component hybrid sensor histidine kinase/response
            regulator protein EC=2.7.3.-
          Length = 1278

 Score =  158 bits (399), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/119 (64%), Positives = 91/119 (76%)

Query: 11   QADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSL 70
            Q DA GL +LVVEDN+DS QLVCELL  LGH+A GV S EEAL  LE+  FDVLFTDV+L
Sbjct: 1158 QEDAGGLRLLVVEDNIDSQQLVCELLETLGHQARGVISGEEALQALEEQGFDVLFTDVNL 1217

Query: 71   PGMSGLELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFSLPKPYDIDQLQDILDNIG 129
            PGMSG+ELAK    + P L +IFASGYG  +++N+G    +LPKPYDIDQLQ+ILD I 
Sbjct: 1218 PGMSGVELAKAALGRFPDLAVIFASGYGTMVARNVGFAAHALPKPYDIDQLQEILDKIA 1276


>Q1D5L4.1 Q1D5L4_MYXXD Sensory box sensor histidine kinase/response regulator
           EC=2.7.3.-
          Length = 862

 Score =  100 bits (250), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 74/125 (59%), Gaps = 3/125 (2%)

Query: 4   SVSSMPDQADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDV 63
           + +  P +    GL IL+VED+ + L  VCELL  +GH    V  AEEA   L   +FD+
Sbjct: 733 ATTPAPARVKQTGLRILLVEDDENILLPVCELLETMGHTVTAVACAEEATPLLRTQEFDL 792

Query: 64  LFTDVSLPGMSGLELAKRTSEKTPALKIIFASGYGAQISKNI-GP--GTFSLPKPYDIDQ 120
           LFTDVSLPG SG+ELA +  +  P L++I ASG+GA +     GP      LPKPY + Q
Sbjct: 793 LFTDVSLPGKSGIELAHQAVQDVPGLRVIIASGHGANVDIGAKGPLDSAVILPKPYGLSQ 852

Query: 121 LQDIL 125
           ++  L
Sbjct: 853 IEQAL 857


>B2JNI2.1 B2JNI2_BURP8 PAS/PAC sensor hybrid histidine kinase
          Length = 815

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 73/112 (65%), Gaps = 1/112 (0%)

Query: 17  LHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGMSGL 76
           L ILVVED  D+   +CEL+A+LGH  E  GSAEEAL  L+   FDVL TD++LPGMSG 
Sbjct: 702 LRILVVEDERDARDALCELIAMLGHTFEAAGSAEEALERLQLRPFDVLLTDLTLPGMSGF 761

Query: 77  ELAKRTSEKTPALKIIFASGYGAQISKNIGPGTFS-LPKPYDIDQLQDILDN 127
           ELA+       A +++F+SG  A +S    P  ++ L KPY  DQL+D LD+
Sbjct: 762 ELARAAVALRAAQRVVFSSGLDATVSDASLPFAWTALRKPYSFDQLKDALDS 813


>Q08S82.1 Q08S82_STIAD Sensor protein
          Length = 853

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 74/135 (54%), Gaps = 12/135 (8%)

Query: 1   MTTSVSSMPDQADAAGLHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHD 60
           +T    S+P  A     H+L+VED+        ELL VLGHR   V SAEEA A L    
Sbjct: 716 LTAGGGSLP--AAKGSRHVLLVEDDEAIRTSALELLDVLGHRVLAVASAEEARAALATDH 773

Query: 61  FDVLFTDVSLPGMSGLELAKRTSEKTPALKIIFASGYGAQISKNIGP---GTFSLPKPYD 117
           FD+LFTDVSLPG SG+ELA+    + P L++I ASGYG  ++   G        LPKPYD
Sbjct: 774 FDILFTDVSLPGQSGVELAREAVHQYPRLQVIIASGYGVTLTPGEGALLGSAVLLPKPYD 833

Query: 118 IDQLQDILDNIGRQL 132
                  L  IGR L
Sbjct: 834 -------LAGIGRAL 841


>E3FW51.1 E3FW51_STIAD Sensor protein
          Length = 1126

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 70/115 (60%), Gaps = 3/115 (2%)

Query: 17   LHILVVEDNLDSLQLVCELLAVLGHRAEGVGSAEEALAELEQHDFDVLFTDVSLPGMSGL 76
            L +L+VED+ D      ELL+ LGH    V SAEEA   L    FDVLFTDV+LPGMSG+
Sbjct: 1008 LRVLLVEDDEDIRASASELLSFLGHDVLAVESAEEARGALVADAFDVLFTDVTLPGMSGV 1067

Query: 77   ELAKRTSEKTPALKIIFASGYGAQISKNIG---PGTFSLPKPYDIDQLQDILDNI 128
            ELA+    +   L+II ASG+G+ + ++ G    G   L KPY + QLQ  L+ +
Sbjct: 1068 ELAREAVRRRAGLRIIIASGHGSAVLEDGGARIAGVVVLAKPYALSQLQRALEQV 1122