BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0015.p         (68 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWF3.1 D8IWF3_HERSS Chemotaxis histidine kinase protein EC=2.7...    77   9e-13

>D8IWF3.1 D8IWF3_HERSS Chemotaxis histidine kinase protein EC=2.7.3.-
          Length = 808

 Score = 77.0 bits (188), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 1/68 (1%)

Query: 1   VTQEHGRIEIEFLDHAEGADFRPFQINVLLPENIAVEIDGIDVAYPLPDLDQTAPAGIVA 60
           VT+EHG+IEI F D  EGA FR FQI V+LPEN+AVE+DGIDV YP+   +   P  ++ 
Sbjct: 742 VTREHGQIEIRFTDTEEGAPFRSFQIIVMLPENVAVEVDGIDVPYPMGGQETVQPV-VLP 800

Query: 61  ADGDPQVA 68
             GD QVA
Sbjct: 801 QGGDSQVA 808