BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0014.p (408 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWF3.1 D8IWF3_HERSS Chemotaxis histidine kinase protein EC=2.7... 303 2e-80 B2JM39.1 B2JM39_BURP8 Putative CheA signal transduction histidin... 222 7e-56 A6SYF1.1 A6SYF1_JANMA Chemotaxis related protein 221 1e-55 D5W840.1 D5W840_BURSC CheA signal transduction histidine kinase 220 4e-55 Q13SF3.1 Q13SF3_BURXL CheA signal transduction histidine kinases... 215 9e-54 >D8IWF3.1 D8IWF3_HERSS Chemotaxis histidine kinase protein EC=2.7.3.- Length = 808 Score = 303 bits (777), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 143/202 (70%), Positives = 171/202 (84%) Query: 172 GTEQVADILASVTDSLPALASELGKAAPAVAIEDNGYVIHTHASPLLKNVFMHLIRNAMD 231 GTE + ++LA VTDSLPALA++LGKAAP V IEDNGYV+H+ A+PLL+NVFMHLIRNAMD Sbjct: 583 GTETIQEVLAPVTDSLPALAADLGKAAPVVQIEDNGYVVHSFAAPLLQNVFMHLIRNAMD 642 Query: 232 HGLETPEERQAKGKQAAGTIRLQLGVMDNMLHMALSDDGRGLALAHIRRTAVDKQLIAAD 291 HGLE+ EER AKGK AG I+L++GVM++M MALSDDGRGLAL +R+ ++K LI D Sbjct: 643 HGLESSEERLAKGKPEAGVIKLEMGVMEDMFQMALSDDGRGLALERVRQIGIEKHLITVD 702 Query: 292 AVPSDAELARLIMRAGFSTRSEVTDVSGRGVGMDAVLDFVTQEHGRIEIEFLDHAEGADF 351 SDAE+ARLI++ GFSTRSEVT+VSGRGVGMDAVLDFVT+EHG+IEI F D EGA F Sbjct: 703 QALSDAEIARLILQPGFSTRSEVTEVSGRGVGMDAVLDFVTREHGQIEIRFTDTEEGAPF 762 Query: 352 RPFQINVLLPENIAVEIDGIDV 373 R FQI V+LPEN+AVE+DGIDV Sbjct: 763 RSFQIIVMLPENVAVEVDGIDV 784 >B2JM39.1 B2JM39_BURP8 Putative CheA signal transduction histidine kinase Length = 796 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 141/205 (68%) Query: 172 GTEQVADILASVTDSLPALASELGKAAPAVAIEDNGYVIHTHASPLLKNVFMHLIRNAMD 231 GTE++ D LA V SLP+LA+ELGK AP V I+DNGY + + A LKNVFMHL+RNA+D Sbjct: 578 GTEKLEDALAGVLQSLPSLAAELGKVAPQVRIDDNGYRVRSQAGATLKNVFMHLLRNAVD 637 Query: 232 HGLETPEERQAKGKQAAGTIRLQLGVMDNMLHMALSDDGRGLALAHIRRTAVDKQLIAAD 291 HG+E+ E+R A GK AG I +++GV + L + LSDDGRGLAL+ IR A D+ + D Sbjct: 638 HGIESIEQRIAFGKPQAGVIEIEVGVAEGALQITLSDDGRGLALSRIRGIAADRGWLQPD 697 Query: 292 AVPSDAELARLIMRAGFSTRSEVTDVSGRGVGMDAVLDFVTQEHGRIEIEFLDHAEGADF 351 + SD +A I R GFST VT+VSGRGVGMDAV DF+ +E GRIE+ F D GADF Sbjct: 698 SQMSDEAIAEFIFRPGFSTAQNVTEVSGRGVGMDAVRDFIRREGGRIELRFTDDRAGADF 757 Query: 352 RPFQINVLLPENIAVEIDGIDVAXA 376 R FQ V LPEN AV+ G + A Sbjct: 758 RQFQTIVYLPENCAVDSVGTSMQDA 782 >A6SYF1.1 A6SYF1_JANMA Chemotaxis related protein Length = 806 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 115/201 (57%), Positives = 143/201 (71%) Query: 172 GTEQVADILASVTDSLPALASELGKAAPAVAIEDNGYVIHTHASPLLKNVFMHLIRNAMD 231 GTE++ + L+ V +S+PALA ELGK AP + I+D GYV+H S LLK+VFMHLIRNAMD Sbjct: 578 GTERIDETLSGVIESMPALAQELGKIAPKIEIKDGGYVVHNQISALLKDVFMHLIRNAMD 637 Query: 232 HGLETPEERQAKGKQAAGTIRLQLGVMDNMLHMALSDDGRGLALAHIRRTAVDKQLIAAD 291 HG+ETPE R A GK AG I L + + + ML++ L DDGRGLAL IR+ A+DK L A Sbjct: 638 HGIETPEVRVALGKPEAGKISLGMDMDEKMLNITLRDDGRGLALKRIRQIALDKGLSDAP 697 Query: 292 AVPSDAELARLIMRAGFSTRSEVTDVSGRGVGMDAVLDFVTQEHGRIEIEFLDHAEGADF 351 D ARLI++AGFST +V++VSGRGVGMDAVL FV++E+G I+I F D A GADF Sbjct: 698 DQLDDLAAARLILQAGFSTADKVSEVSGRGVGMDAVLAFVSRENGSIDIRFDDEATGADF 757 Query: 352 RPFQINVLLPENIAVEIDGID 372 R F I V LP AV+ D D Sbjct: 758 RQFHIIVALPAAFAVKADEAD 778 >D5W840.1 D5W840_BURSC CheA signal transduction histidine kinase Length = 792 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 112/207 (54%), Positives = 146/207 (70%), Gaps = 2/207 (0%) Query: 172 GTEQVADILASVTDSLPALASELGKAAPAVAIEDNGYVIHTHASPLLKNVFMHLIRNAMD 231 GTE + + LA V +SLP+LA+ELGK AP V+I++NGY + + S L+NVF HL+RN++D Sbjct: 578 GTESIYEALAGVLESLPSLAAELGKEAPVVSIDNNGYRVRSEISHTLRNVFTHLLRNSVD 637 Query: 232 HGLETPEERQAKGKQAAGTIRLQLGVMDNMLHMALSDDGRGLALAHIRRTAVDKQLIAAD 291 HG+E ER A GK AAG I L++GV + L + +SDDGRGLALA IR A+++ I AD Sbjct: 638 HGIEPAAERIANGKDAAGVIELEVGVDHHALQITISDDGRGLALAKIRAAAIERGWIDAD 697 Query: 292 AVPSDAELARLIMRAGFSTRSEVTDVSGRGVGMDAVLDFVTQEHGRIEIEFLDHAEGADF 351 A SD +A LI R+GFST V+++SGRGVGMDAV DFV +EHGRIE+ F D GAD+ Sbjct: 698 AALSDEAIAELIFRSGFSTAQSVSEISGRGVGMDAVRDFVGREHGRIELRFTDDRRGADY 757 Query: 352 RPFQINVLLPENIAVEIDGIDVAXAAA 378 R FQ V PE+ AV D +D + AA Sbjct: 758 RRFQTVVSFPEDWAV--DSLDASVDAA 782 >Q13SF3.1 Q13SF3_BURXL CheA signal transduction histidine kinases (STHK) EC=2.7.3.- Length = 796 Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 108/201 (53%), Positives = 139/201 (69%) Query: 172 GTEQVADILASVTDSLPALASELGKAAPAVAIEDNGYVIHTHASPLLKNVFMHLIRNAMD 231 G+E V D L+ V DSLP+LASELGK AP+V IEDNGY + A L NVFMHL+RN+MD Sbjct: 581 GSESVRDALSGVLDSLPSLASELGKPAPSVRIEDNGYRLRGEAGGTLNNVFMHLLRNSMD 640 Query: 232 HGLETPEERQAKGKQAAGTIRLQLGVMDNMLHMALSDDGRGLALAHIRRTAVDKQLIAAD 291 HG+ET E R A GK AG+IR+++G+ L + LSDDGRGLAL IR A+++ I D Sbjct: 641 HGIETAETRSAHGKAPAGSIRIEVGLDSGALQITLSDDGRGLALERIRGIAMERGWIGPD 700 Query: 292 AVPSDAELARLIMRAGFSTRSEVTDVSGRGVGMDAVLDFVTQEHGRIEIEFLDHAEGADF 351 SD +A I R GFST VT++SGRGVGMDAV DF+ + +G IE+ F D +GA + Sbjct: 701 DTLSDEAIADFIFRPGFSTAETVTELSGRGVGMDAVRDFLKRANGSIELRFTDDQKGAAY 760 Query: 352 RPFQINVLLPENIAVEIDGID 372 R FQ V LP++IAV+ G++ Sbjct: 761 RQFQTIVCLPDSIAVDTLGVE 781