BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0006.0011.p         (83 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWJ9.1 D8IWJ9_HERSS AraC family ethanolamine operon transcript...   123   8e-27
Q221G8.1 Q221G8_RHOFD Transcriptional regulator, AraC family          110   8e-23
A1VQJ8.1 A1VQJ8_POLNA Transcriptional regulator, AraC family          103   6e-21
Q2STK7.1 Q2STK7_BURTA HTH-type transcriptional regulator eutR         103   9e-21
B2SZ98.1 B2SZ98_BURPP Transcriptional regulator, AraC family          102   2e-20

>D8IWJ9.1 D8IWJ9_HERSS AraC family ethanolamine operon transcription
           regulator protein
          Length = 332

 Score =  123 bits (309), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/81 (71%), Positives = 69/81 (85%), Gaps = 2/81 (2%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSPHAVRVGDVAAAWGFSNF 60
           VSRRTLQYCFEDVLG+SPM+YLRSLRLNGVRR L  G    +  +  +GD+AAAWGF+NF
Sbjct: 250 VSRRTLQYCFEDVLGMSPMSYLRSLRLNGVRRALCHGDGRQAVGS--IGDIAAAWGFANF 307

Query: 61  SQFSCDYKKLFGESPSSALRA 81
           SQFSCDYKKLFG++PS+ L+A
Sbjct: 308 SQFSCDYKKLFGQTPSAMLQA 328


>Q221G8.1 Q221G8_RHOFD Transcriptional regulator, AraC family
          Length = 330

 Score =  110 bits (275), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 54/80 (67%), Positives = 62/80 (77%), Gaps = 4/80 (5%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSPHAVRVGDVAAAWGFSNF 60
           VSRRTLQYCFEDVLG+SPM YLR +RLNG RR L Q     S  ++ V DVAA WGF +F
Sbjct: 251 VSRRTLQYCFEDVLGMSPMQYLRLIRLNGARRHLRQA----SSKSLTVQDVAADWGFWHF 306

Query: 61  SQFSCDYKKLFGESPSSALR 80
           SQFS DY+KLFG+SPS +LR
Sbjct: 307 SQFSSDYRKLFGQSPSESLR 326


>A1VQJ8.1 A1VQJ8_POLNA Transcriptional regulator, AraC family
          Length = 347

 Score =  103 bits (258), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 61/80 (76%), Gaps = 4/80 (5%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSPHAVRVGDVAAAWGFSNF 60
           VSRRTLQYCFEDVL ISP+ YLR +RLNG RR+L +  +     A  V D+AA WGF +F
Sbjct: 268 VSRRTLQYCFEDVLAISPIQYLRLIRLNGARRELRERCS----DARTVRDIAADWGFWHF 323

Query: 61  SQFSCDYKKLFGESPSSALR 80
           SQFS DY+KLFG+SPS +LR
Sbjct: 324 SQFSSDYRKLFGQSPSESLR 343


>Q2STK7.1 Q2STK7_BURTA HTH-type transcriptional regulator eutR
          Length = 342

 Score =  103 bits (257), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 63/82 (76%), Gaps = 6/82 (7%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSPHAVRVGDVAAAWGFSNF 60
           VSRRTLQYCF+DVLG++P TYLR+LRLNGVRR L +G AA S     V DVAAAWGF + 
Sbjct: 264 VSRRTLQYCFQDVLGMAPATYLRALRLNGVRRDL-RGRAADS-----VQDVAAAWGFWHL 317

Query: 61  SQFSCDYKKLFGESPSSALRAA 82
           SQF+ DY+++FG  PS  LR A
Sbjct: 318 SQFATDYRRMFGARPSETLRGA 339


>B2SZ98.1 B2SZ98_BURPP Transcriptional regulator, AraC family
          Length = 349

 Score =  102 bits (254), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 61/82 (74%), Gaps = 4/82 (4%)

Query: 1   VSRRTLQYCFEDVLGISPMTYLRSLRLNGVRRQLMQGAAAVSPHAVRVGDVAAAWGFSNF 60
           VSRRTLQYCF+DVLGI+P TYLR++RLNG RR L    +  S  +  V DVAAAWGF + 
Sbjct: 256 VSRRTLQYCFQDVLGIAPATYLRAIRLNGARRDL----SNASRESRSVQDVAAAWGFWHL 311

Query: 61  SQFSCDYKKLFGESPSSALRAA 82
           SQF+ DY+KLFG  PS  L+AA
Sbjct: 312 SQFATDYRKLFGMRPSDTLKAA 333