BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0305.p (504 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7X2U3.1 B7X2U3_COMTE Outer membrane efflux protein 605 e-171 D8DD76.1 D8DD76_COMTE Putative outer membrane efflux protein 573 e-161 A1K8L6.1 A1K8L6_AZOSB Putative outer membrane efflux protein 463 e-128 B1Y5U5.1 B1Y5U5_LEPCP Outer membrane efflux protein 409 e-112 B8KMR8.1 B8KMR8_9GAMM Outer membrane efflux protein 380 e-103 >B7X2U3.1 B7X2U3_COMTE Outer membrane efflux protein Length = 513 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 300/488 (61%), Positives = 374/488 (76%), Gaps = 5/488 (1%) Query: 11 SVVILSGCSTFDVESARLSTAEIQATLTEDKAVLTRDVEPLTGPLTLNEAIARALKYNAD 70 S + L+GC+ ++ LST EIQ+ + D+ L +DV +TGP++L EAIARA+KYNA Sbjct: 25 SAIWLTGCANLTGQA--LSTEEIQSQVRADRQSLGKDVAAVTGPVSLEEAIARAIKYNAA 82 Query: 71 RRYRAMEEAVAMGSFEAGQFDMLPKLIASAGYRNRNNDLITRSTDSVTGRPSLANPYISS 130 +R R MEEAVA G+ +FDMLPKL+ASAGYR R+ DLI+RSTDSVTG PSLA+PYISS Sbjct: 83 QRLRGMEEAVAQGTANVARFDMLPKLVASAGYRYRDKDLISRSTDSVTGAPSLAHPYISS 142 Query: 131 SRTAITSEVGISWSLLDFGQSYYAARQNADRVLIAGERRRKALHNLILDVRTAYWRVVAA 190 R + + + SWSLLDFGQSYYAARQ+ADR IA ERRRKA+H LI DVR AYWRV AA Sbjct: 143 DRESTLTSLSFSWSLLDFGQSYYAARQHADRAQIAAERRRKAIHTLIQDVRIAYWRVAAA 202 Query: 191 QKLMPALRATITESEQALKDARKAEDDRIRSPLEPLRYQRQLLENLRLLETIEQELSTAR 250 Q L +L+ ++++AL+D+RK E +++RSP+EPLRYQRQLLEN+RLLE I+QELS++R Sbjct: 203 QALESSLQTAGQDADKALEDSRKVEAEKLRSPMEPLRYQRQLLENIRLLEAIQQELSSSR 262 Query: 251 IELATLTALP---LATDYTVVEETTDINTAWLSQPMDKMEEVALLRNPDLREGIYNARIA 307 IELA+L + L V+E WL QP+DK+E+ ALL NPDLRE +YNARIA Sbjct: 263 IELASLMGVSPAELNQPLRVIEPAASNAQRWLEQPVDKLEDRALLLNPDLRESLYNARIA 322 Query: 308 QKETRRTLLKFFPGLSFNYGYKRSDDDYLIHQNWTEAGAQISFNLLGLLSAPAQMRLADA 367 +ET+R +L+ FPGLSFNYG +S D YLI+ W +AG QISFNLLGLLS PAQ +LADA Sbjct: 323 NEETKRVMLRMFPGLSFNYGVNKSSDSYLINDRWQDAGLQISFNLLGLLSLPAQRQLADA 382 Query: 368 GVALADRRRMAIQMAVLSQLHIARLQYANTARQYERSDAIAQVDVRLAQHVANQASAQKQ 427 GV LAD+RR+A QMAVL+QLH+ARLQ+AN RQYER+ IA VD RL++HV NQ A K Sbjct: 383 GVQLADQRRLATQMAVLTQLHVARLQFANAVRQYERAQTIASVDQRLSEHVNNQVQADKL 442 Query: 428 SALDRISQQSTAVLSQLRRYQALSNAQAAASRLQATLGMEPTVEATADMPLSTLTAAIGK 487 +AL+R+SQQ+T +LS LRRYQA SN QAA+SRLQATLGMEP +E + MPL LT A+GK Sbjct: 443 NALERVSQQTTTILSVLRRYQAQSNMQAASSRLQATLGMEPVIEGSDSMPLPELTQAVGK 502 Query: 488 SLQTWDQG 495 SLQ+WD G Sbjct: 503 SLQSWDAG 510 >D8DD76.1 D8DD76_COMTE Putative outer membrane efflux protein Length = 447 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 282/444 (63%), Positives = 347/444 (78%), Gaps = 3/444 (0%) Query: 55 LTLNEAIARALKYNADRRYRAMEEAVAMGSFEAGQFDMLPKLIASAGYRNRNNDLITRST 114 ++L EAIARA+KYNA +R R MEEAVA G+ +FDMLPKL+ASAGYR R+ DLI+RST Sbjct: 1 MSLEEAIARAIKYNAAQRLRGMEEAVAQGTANVAKFDMLPKLVASAGYRYRDKDLISRST 60 Query: 115 DSVTGRPSLANPYISSSRTAITSEVGISWSLLDFGQSYYAARQNADRVLIAGERRRKALH 174 DSVTG PSLA+PYISS R + + + SWSLLDFGQSYYAARQ+ADR IA ERRRKA+H Sbjct: 61 DSVTGAPSLAHPYISSDRESTLASLSFSWSLLDFGQSYYAARQHADRAQIAAERRRKAIH 120 Query: 175 NLILDVRTAYWRVVAAQKLMPALRATITESEQALKDARKAEDDRIRSPLEPLRYQRQLLE 234 LI DVR AYWRV AAQ L +L+ ++++AL+D+RK E +++RSP+EPLRYQRQLLE Sbjct: 121 TLIQDVRIAYWRVAAAQALESSLQTAGQDADKALEDSRKVEAEKLRSPMEPLRYQRQLLE 180 Query: 235 NLRLLETIEQELSTARIELATLTALP---LATDYTVVEETTDINTAWLSQPMDKMEEVAL 291 N+RLLE I+QELS++RIELA+L + L V+E WL +P+DK+E+ AL Sbjct: 181 NIRLLEAIQQELSSSRIELASLMGVSPAELNQPLRVIEPAASNAQRWLEKPVDKLEDRAL 240 Query: 292 LRNPDLREGIYNARIAQKETRRTLLKFFPGLSFNYGYKRSDDDYLIHQNWTEAGAQISFN 351 L NPDLRE +YNARIA +ET+R +L+ FPGLSFNYG +S D YLI+ W +AG QISFN Sbjct: 241 LLNPDLRESLYNARIANEETKRVMLRMFPGLSFNYGVNKSSDSYLINDRWQDAGLQISFN 300 Query: 352 LLGLLSAPAQMRLADAGVALADRRRMAIQMAVLSQLHIARLQYANTARQYERSDAIAQVD 411 LLGLLS PAQ +LADAGV LAD+RR+A QMAVL+QLH+ARLQ+AN RQYER+ IA VD Sbjct: 301 LLGLLSLPAQRQLADAGVQLADQRRLATQMAVLTQLHVARLQFANAVRQYERAQTIASVD 360 Query: 412 VRLAQHVANQASAQKQSALDRISQQSTAVLSQLRRYQALSNAQAAASRLQATLGMEPTVE 471 RL++HV NQ A K +AL+R+SQQ+T +LS LRRYQA SN QAA+SRLQATLGMEP +E Sbjct: 361 QRLSEHVNNQVQADKLNALERVSQQTTTILSVLRRYQAQSNMQAASSRLQATLGMEPVIE 420 Query: 472 ATADMPLSTLTAAIGKSLQTWDQG 495 + MPL LT A+GKSLQ+WD G Sbjct: 421 GSDSMPLPELTQAVGKSLQSWDAG 444 >A1K8L6.1 A1K8L6_AZOSB Putative outer membrane efflux protein Length = 514 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 251/479 (52%), Positives = 332/479 (69%), Gaps = 7/479 (1%) Query: 16 SGCSTFDVESARLSTAEIQATLTEDKAVLTRDVEPLTGPLTLNEAIARALKYNADRRYRA 75 S CST ++ L A ++ +D A DVEPL LTL++AIARALKYN DRR + Sbjct: 20 SACST--IQPQPLGEAALREQGAKDHAAAAADVEPLDTELTLDQAIARALKYNLDRRVKM 77 Query: 76 MEEAVAMGSFEAGQFDMLPKLIASAGYRNRNNDLITRSTDSVTGRPSLANP--YISSSRT 133 MEEA+ + +DMLP+L+A AGY RNND +RS + TG + N +IS R Sbjct: 78 MEEALTFRQLDVAHYDMLPRLLAQAGYSWRNNDRTSRSLNPDTG---VVNEIGFISQDRE 134 Query: 134 AITSEVGISWSLLDFGQSYYAARQNADRVLIAGERRRKALHNLILDVRTAYWRVVAAQKL 193 + +G+SW+LLD G Y+ RQ ADRVLIA E+RRKA+H L+ DVRTA+WR +AQKL Sbjct: 135 HTLNSLGVSWNLLDLGVGYFNTRQQADRVLIATEKRRKAMHLLMQDVRTAFWRAASAQKL 194 Query: 194 MPALRATITESEQALKDARKAEDDRIRSPLEPLRYQRQLLENLRLLETIEQELSTARIEL 253 +RA +E+AL D+RKAE +R+R+P++ LRYQRQ+LENLRLLE I+QELSTARIEL Sbjct: 195 QADVRAATRTAEEALADSRKAEAERLRNPIDALRYQRQVLENLRLLEAIDQELSTARIEL 254 Query: 254 ATLTALPLATDYTVVEETTDINTAWLSQPMDKMEEVALLRNPDLREGIYNARIAQKETRR 313 A L PL T+VE ++ L P + MEEVA+ N D+RE YNARIA++ETR+ Sbjct: 255 AALINAPLGQSLTLVEPPAMVDRQPLEIPAELMEEVAMTSNADVREQHYNARIAREETRK 314 Query: 314 TLLKFFPGLSFNYGYKRSDDDYLIHQNWTEAGAQISFNLLGLLSAPAQMRLADAGVALAD 373 TL++ FP LSFNYG D YL++ W EAG Q+SFNL L + P Q+RLADAGVALAD Sbjct: 315 TLVRLFPNLSFNYGLSYDTDSYLVNNRWNEAGVQLSFNLFNLFTGPTQLRLADAGVALAD 374 Query: 374 RRRMAIQMAVLSQLHIARLQYANTARQYERSDAIAQVDVRLAQHVANQASAQKQSALDRI 433 +RR+A QMAVL+Q+H+ RLQ AN Q+ER+DAI + D R+A+H N+ ++Q QS LD + Sbjct: 375 QRRVAAQMAVLAQVHVGRLQLANALNQFERADAIWETDRRIAEHTRNREASQAQSKLDVV 434 Query: 434 SQQSTAVLSQLRRYQALSNAQAAASRLQATLGMEPTVEATADMPLSTLTAAIGKSLQTW 492 + Q+TA+LS LRRYQAL+ AQAA +RLQATLG+EP + + ++PL+ LT + +S W Sbjct: 435 ANQTTAILSLLRRYQALAQAQAAEARLQATLGIEPGIGSVGEIPLADLTRDVSQSRNVW 493 >B1Y5U5.1 B1Y5U5_LEPCP Outer membrane efflux protein Length = 496 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/477 (45%), Positives = 314/477 (65%), Gaps = 2/477 (0%) Query: 5 TIAGAISVVILSGCSTFDVESARLSTAEIQATLTEDKAVLTRDVEPLTGPLTLNEAIARA 64 T+ ++ +L+ C+ ++ L E QA D RDV PL L L+EAIARA Sbjct: 11 TLVAPATLALLTACAQLPPQA--LQADEHQAQTRADSEAARRDVPPLGAQLGLDEAIARA 68 Query: 65 LKYNADRRYRAMEEAVAMGSFEAGQFDMLPKLIASAGYRNRNNDLITRSTDSVTGRPSLA 124 LKYN DRR R ME+A+A+ ++A +D LPKL+ASAGY R++D + RS ++ TG+ Sbjct: 69 LKYNLDRRARLMEQAMALQQYDASAYDSLPKLVASAGYSARDSDRLARSVNAATGQQIGV 128 Query: 125 NPYISSSRTAITSEVGISWSLLDFGQSYYAARQNADRVLIAGERRRKALHNLILDVRTAY 184 +P IS R ++ ++WSLLDFG + Y ++Q DRVL A ERRRKA H L+ DVR AY Sbjct: 129 DPSISQERQHTLVQLDMTWSLLDFGLAKYNSQQAGDRVLAAAERRRKATHLLVQDVRVAY 188 Query: 185 WRVVAAQKLMPALRATITESEQALKDARKAEDDRIRSPLEPLRYQRQLLENLRLLETIEQ 244 WR +AQ+L +RA + +++A+ DAR+AE++++R+PL+ LRYQRQL EN+RLLE+IEQ Sbjct: 189 WRAASAQRLHGEVRAALALADEAMVDARRAEEEKLRAPLDSLRYQRQLTENMRLLESIEQ 248 Query: 245 ELSTARIELATLTALPLATDYTVVEETTDINTAWLSQPMDKMEEVALLRNPDLREGIYNA 304 EL TAR +LA L P+ ++ T L+ + MEE AL +N DLRE Y Sbjct: 249 ELVTARYDLAGLINAPVMMQVEFDSDSKLGQTDLLATSAEAMEEQALAQNADLREQAYQR 308 Query: 305 RIAQKETRRTLLKFFPGLSFNYGYKRSDDDYLIHQNWTEAGAQISFNLLGLLSAPAQMRL 364 RIA E + L + +P LSFN G + D YL++++W EAG Q+S+NL LLS PAQ Sbjct: 309 RIAATEVHKVLARIYPNLSFNLGARYDTDSYLVNKSWNEAGMQVSYNLWNLLSVPAQKLA 368 Query: 365 ADAGVALADRRRMAIQMAVLSQLHIARLQYANTARQYERSDAIAQVDVRLAQHVANQASA 424 A+AGVALAD+RR+A +AV++Q+H+AR Q A+ Q +R+DA+ +D ++ + + + A Sbjct: 369 AEAGVALADQRRLAAHVAVVTQVHVAREQLASARLQLKRADALWTLDSKIMEQLMRREQA 428 Query: 425 QKQSALDRISQQSTAVLSQLRRYQALSNAQAAASRLQATLGMEPTVEATADMPLSTL 481 Q S L+R++ Q+T ++S LRRYQAL+ A AA SRLQATLG++P +++ D+ L+ + Sbjct: 429 QAGSKLERVAAQTTTIVSLLRRYQALAQAHAATSRLQATLGIDPLPDSSDDLSLAQI 485 >B8KMR8.1 B8KMR8_9GAMM Outer membrane efflux protein Length = 524 Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust. Identities = 211/477 (44%), Positives = 325/477 (68%), Gaps = 4/477 (0%) Query: 13 VILSGCSTFDVESARLSTAEIQATLTEDKAVLTRDVEPLTGPLTLNEAIARALKYNADRR 72 +++SGC +V +S ++A + DKA + P++GPL+L+EAIARALKYN + R Sbjct: 40 LLVSGC---NVAPTPISDEALRAAIETDKANIAAIAAPVSGPLSLSEAIARALKYNLNHR 96 Query: 73 YRAMEEAVAMGSFEAGQFDMLPKLIASAGYRNRNNDLITRSTDSVTGRPSLANPYISSSR 132 R +EE++A F+ + DMLP+++A GY R+ + I R+ DSVTG PSL+NP+I+S Sbjct: 97 TRLLEESLASAQFDLSKMDMLPQVMAGVGYSGRDRENIRRAVDSVTGLPSLSNPFITSEP 156 Query: 133 TAITSEVGISWSLLDFGQSYYAARQNADRVLIAGERRRKALHNLILDVRTAYWRVVAAQK 192 +T+++G++W+LLDFG SYY A+QNADR+L+AGERRR+A+H LI R+A+WR VAA K Sbjct: 157 EHVTADLGLTWNLLDFGVSYYGAKQNADRLLVAGERRRQAMHELIQRTRSAFWRAVAADK 216 Query: 193 LMPALRATITESEQALKDARKAEDDRIRSPLEPLRYQRQLLENLRLLETIEQELSTARIE 252 L A+R + E+E+AL +R RIR P LRYQR LLENLRLLE++++ELS +R+E Sbjct: 217 LDAAVRDNLDEAERALAKSRSMLKQRIRQPSSALRYQRNLLENLRLLESVQRELSASRVE 276 Query: 253 LATLTALPLATDYTVVEETTDINTAWLSQPMDKMEEVALLRNPDLREGIYNARIAQKETR 312 LA+L +++E + N + L + MEEVAL N LRE YN RI +TR Sbjct: 277 LASLIGAEPGQVLSLIEPDRN-NASLLELDVLTMEEVALANNASLREEHYNVRITALQTR 335 Query: 313 RTLLKFFPGLSFNYGYKRSDDDYLIHQNWTEAGAQISFNLLGLLSAPAQMRLADAGVALA 372 ++L++ PG+S +YG DDD+LI+++W + G ++++NLL LL+ P Q R A A +A Sbjct: 336 KSLVQMLPGVSLDYGSYYDDDDFLIYESWRQGGLRVTYNLLNLLAIPKQQRAAKAAERVA 395 Query: 373 DRRRMAIQMAVLSQLHIARLQYANTARQYERSDAIAQVDVRLAQHVANQASAQKQSALDR 432 + RRMA+Q+AVL+Q+H+ R Y + RQ+ER++ IA +D++L + +N++ + S LDR Sbjct: 396 ETRRMALQVAVLTQVHLGRNYYRSVLRQFERAEQIADIDMQLMELSSNESQSGTGSELDR 455 Query: 433 ISQQSTAVLSQLRRYQALSNAQAAASRLQATLGMEPTVEATADMPLSTLTAAIGKSL 489 ++ + ++LS++RRYQA++ + AAS+LQATLG+EP + + + + LT + + L Sbjct: 456 VAANAVSILSEVRRYQAIARVEEAASQLQATLGLEPELASLDQLSMPALTDIMRREL 512