BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0290.p (198 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C6BQ77.1 C6BQ77_RALP1 Integrase catalytic region 280 7e-74 E2T606.1 E2T606_9RALS Transposase OrfB, IS3 family 280 7e-74 A3VM84.1 A3VM84_9RHOB Putative transposase 258 2e-67 E8L8Z9.1 E8L8Z9_9RHIZ Integrase catalytic region 220 8e-56 D4Z0W4.1 D4Z0W4_SPHJU Putative transposase 209 1e-52 >C6BQ77.1 C6BQ77_RALP1 Integrase catalytic region Length = 266 Score = 280 bits (717), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 137/193 (70%), Positives = 157/193 (81%) Query: 6 RRRFKPVAGSEADGAVFPNRYRNVIPTEPDRVWVADITYIRIASGFIYLAVVLDACSRKV 65 RRR+ D A FPN YRNVIP++PD VWV DIT+I++A+GF+YLA +LDACSRKV Sbjct: 74 RRRYARAGTESGDLAAFPNLYRNVIPSKPDLVWVGDITFIKVAAGFVYLAAILDACSRKV 133 Query: 66 IGYALSKRIDTPLALAALTAAYRSRKPAPNTCIHHTDRGCQYGSALYREALEEFGLIGSM 125 +GYA+S+RIDT L LAAL AA R+R+P P +CIHHTD+G QY SA YR AL E+GLIGSM Sbjct: 134 VGYAISRRIDTDLTLAALFAALRNRRPTPGSCIHHTDQGSQYASARYRAALREYGLIGSM 193 Query: 126 SAPANPYHNAQAESFMKTLKVEEVYLAGYEKFDDVAGRLPYFIEEIYNERRMHSALGYQS 185 SAP NPYHNAQAESFMKTLKVEEVYLAGY FDDVA RLP FIE+ YN +RMHSALGY S Sbjct: 194 SAPGNPYHNAQAESFMKTLKVEEVYLAGYRTFDDVAARLPRFIEDTYNAKRMHSALGYVS 253 Query: 186 PNHFEAQLARQAA 198 PN FE+QL QAA Sbjct: 254 PNQFESQLTLQAA 266 >E2T606.1 E2T606_9RALS Transposase OrfB, IS3 family Length = 266 Score = 280 bits (717), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 137/193 (70%), Positives = 157/193 (81%) Query: 6 RRRFKPVAGSEADGAVFPNRYRNVIPTEPDRVWVADITYIRIASGFIYLAVVLDACSRKV 65 RRR+ D A FPN YRNVIP++PD VWV DIT+I++A+GF+YLA +LDACSRKV Sbjct: 74 RRRYARAGTESGDLAAFPNLYRNVIPSKPDLVWVGDITFIKVAAGFVYLAAILDACSRKV 133 Query: 66 IGYALSKRIDTPLALAALTAAYRSRKPAPNTCIHHTDRGCQYGSALYREALEEFGLIGSM 125 +GYA+S+RIDT L LAAL AA R+R+P P +CIHHTD+G QY SA YR AL E+GLIGSM Sbjct: 134 VGYAISRRIDTDLTLAALFAALRNRRPTPGSCIHHTDQGSQYASARYRAALREYGLIGSM 193 Query: 126 SAPANPYHNAQAESFMKTLKVEEVYLAGYEKFDDVAGRLPYFIEEIYNERRMHSALGYQS 185 SAP NPYHNAQAESFMKTLKVEEVYLAGY FDDVA RLP FIE+ YN +RMHSALGY S Sbjct: 194 SAPGNPYHNAQAESFMKTLKVEEVYLAGYRTFDDVAARLPRFIEDTYNAKRMHSALGYVS 253 Query: 186 PNHFEAQLARQAA 198 PN FE+QL QAA Sbjct: 254 PNQFESQLTLQAA 266 >A3VM84.1 A3VM84_9RHOB Putative transposase Length = 264 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 132/193 (68%), Positives = 152/193 (78%), Gaps = 1/193 (0%) Query: 6 RRRFKPVAGSEADGAVFPNRYRNVIPTEPDRVWVADITYIRIASGFIYLAVVLDACSRKV 65 RRRF S+ D +FPN YRN IP PDR+WVAD TYIR+A+GF +LA +LDACSRKV Sbjct: 73 RRRFVRTTDSQHDSPIFPNLYRNAIPDRPDRIWVADFTYIRVATGFCFLAAILDACSRKV 132 Query: 66 IGYALSKRIDTPLALAALTAAYRSRKPAPNTCIHHTDRGCQYGSALYREALEEFGLIGSM 125 +GYALS+R+DTPLALAAL AA +R P P CIHHTDRG QY S YR+AL + GL GSM Sbjct: 133 VGYALSQRLDTPLALAALRAAVANRAP-PAGCIHHTDRGSQYASQTYRDALADAGLQGSM 191 Query: 126 SAPANPYHNAQAESFMKTLKVEEVYLAGYEKFDDVAGRLPYFIEEIYNERRMHSALGYQS 185 S NPYHNAQAESFMKTLKVEEVY AGYE F DVA RLP +IE++YN +R+HSALGY+S Sbjct: 192 SGVGNPYHNAQAESFMKTLKVEEVYRAGYETFTDVAARLPRYIEQVYNAKRLHSALGYRS 251 Query: 186 PNHFEAQLARQAA 198 P FE QLAR+AA Sbjct: 252 PEEFETQLAREAA 264 >E8L8Z9.1 E8L8Z9_9RHIZ Integrase catalytic region Length = 265 Score = 220 bits (561), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 108/183 (59%), Positives = 131/183 (71%), Gaps = 1/183 (0%) Query: 15 SEADGAVFPNRYRNVIPTEPDRVWVADITYIRIASGFIYLAVVLDACSRKVIGYALSKRI 74 S+ D +FPN R++ + PD++WVADITY+ I GF Y+AV+LDA SR V+GYA+S+ I Sbjct: 79 SDHDQPIFPNLARDMALSGPDQLWVADITYVAIVGGFAYVAVILDAWSRLVVGYAISRAI 138 Query: 75 DTPLALAALTAAYRSRKPAPNTCIHHTDRGCQYGSALYREALEEFGLIGSMSAPANPYHN 134 D LA++AL AA RKP P C+HH+DRG QY + YRE L E GLIGSM NPY N Sbjct: 139 DARLAISALKAAIERRKPPPG-CVHHSDRGSQYAAGRYREVLAEHGLIGSMGRRGNPYDN 197 Query: 135 AQAESFMKTLKVEEVYLAGYEKFDDVAGRLPYFIEEIYNERRMHSALGYQSPNHFEAQLA 194 A+AESFMKTLK+E VY YE FDDV LP FI++IYN RR+HSALGY SP FE Q Sbjct: 198 AKAESFMKTLKIEAVYPMAYETFDDVTEGLPRFIDDIYNRRRLHSALGYLSPQQFEDQHT 257 Query: 195 RQA 197 RQA Sbjct: 258 RQA 260 >D4Z0W4.1 D4Z0W4_SPHJU Putative transposase Length = 265 Score = 209 bits (533), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 103/185 (55%), Positives = 132/185 (71%), Gaps = 1/185 (0%) Query: 6 RRRFKPVAGSEADGAVFPNRYRNVIPTEPDRVWVADITYIRIASGFIYLAVVLDACSRKV 65 RRR+ S+ D +FP+ ++V T D++WVAD+TY+ IASGF Y+A++LDA SR+V Sbjct: 70 RRRYVATTDSDHDLPIFPDLAKDVALTGADQLWVADLTYVAIASGFAYVAIILDAWSRRV 129 Query: 66 IGYALSKRIDTPLALAALTAAYRSRKPAPNTCIHHTDRGCQYGSALYREALEEFGLIGSM 125 +GYA+ + ID LA+AAL A SR+P+P IHH+DRG QY +A YR L G+ GSM Sbjct: 130 VGYAIGRSIDARLAIAALETAIASRQPSPG-LIHHSDRGSQYAAASYRALLAANGITGSM 188 Query: 126 SAPANPYHNAQAESFMKTLKVEEVYLAGYEKFDDVAGRLPYFIEEIYNERRMHSALGYQS 185 S NPY NA+AESFMKTLKVE VY +E F+DVA LP FI+ +YNERR+HSALGY S Sbjct: 189 SRRGNPYDNAKAESFMKTLKVEAVYPMAFETFEDVATHLPPFIDRVYNERRLHSALGYLS 248 Query: 186 PNHFE 190 P FE Sbjct: 249 PVQFE 253