BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0285.p         (177 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A6T473.1 ATPD_JANMA ATP synthase subunit delta                        268   2e-70
A4GAH2.1 ATPD_HERAR ATP synthase subunit delta                        267   5e-70
D8IVM5.1 D8IVM5_HERSS ATP synthase subunit delta                      256   9e-67
F1W3F1.1 F1W3F1_9BURK ATP synthase delta chain                        238   2e-61
D8N3S3.1 D8N3S3_RALSO ATP synthase subunit delta 3                    228   3e-58

>A6T473.1 ATPD_JANMA ATP synthase subunit delta
          Length = 177

 Score =  268 bits (685), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 134/177 (75%), Positives = 149/177 (84%)

Query: 1   MAELATIARPYAEALFRVAKAGSLSAWADLVSEMAQAAAHHDVKDMAQNPALSDEQVVST 60
           MAELATIARPYAEALFRVAKA  L++WA+LVSEMAQ AA+ DV  +A NP +SD+ + ST
Sbjct: 1   MAELATIARPYAEALFRVAKAADLNSWANLVSEMAQVAANPDVYALAHNPKVSDDLISST 60

Query: 61  FSSVLKTPLSVEAKNFVSALVQNGRLTLLPEIAAQFHTLKNAQEGAADAEITSAFELSDA 120
           F S LK+P+  EAKNF++ LVQN RLTLLPEIA QFH LKNAQEGAADAEI SAFELS A
Sbjct: 61  FISALKSPVGAEAKNFINMLVQNDRLTLLPEIATQFHALKNAQEGAADAEIVSAFELSSA 120

Query: 121 QLKDVVVTLEKKFGRKLTPTVKVDNALIGGVRVVVGDEVFDTSVRAKLQQLHVALAA 177
           QL ++V TLEKKFGRKL PTV VD ALIGGVRVVVGDEV DTSVRAKLQQ+ VAL A
Sbjct: 121 QLTELVATLEKKFGRKLNPTVTVDGALIGGVRVVVGDEVLDTSVRAKLQQMQVALTA 177


>A4GAH2.1 ATPD_HERAR ATP synthase subunit delta
          Length = 177

 Score =  267 bits (682), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 133/177 (75%), Positives = 148/177 (83%)

Query: 1   MAELATIARPYAEALFRVAKAGSLSAWADLVSEMAQAAAHHDVKDMAQNPALSDEQVVST 60
           MAELATIARPYAEALFRVAKA  L+ W++LVSEMAQ AAH DV  +A NP +SD+ + S 
Sbjct: 1   MAELATIARPYAEALFRVAKAADLNGWSELVSEMAQVAAHPDVYALAHNPKISDDVISSA 60

Query: 61  FSSVLKTPLSVEAKNFVSALVQNGRLTLLPEIAAQFHTLKNAQEGAADAEITSAFELSDA 120
           F S LK+P+  EAKNF++ LVQN RLTLLPEIA QFH LKNAQEGAADAEI SAFELS A
Sbjct: 61  FISALKSPVGAEAKNFINMLVQNDRLTLLPEIATQFHALKNAQEGAADAEIVSAFELSAA 120

Query: 121 QLKDVVVTLEKKFGRKLTPTVKVDNALIGGVRVVVGDEVFDTSVRAKLQQLHVALAA 177
           QL ++V TLEKKFGRKL PTV VD+ALIGGVRVVVGDEV DTSVRAKLQQ+ VAL A
Sbjct: 121 QLTELVATLEKKFGRKLNPTVAVDSALIGGVRVVVGDEVLDTSVRAKLQQMQVALTA 177


>D8IVM5.1 D8IVM5_HERSS ATP synthase subunit delta
          Length = 177

 Score =  256 bits (654), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 124/167 (74%), Positives = 143/167 (85%)

Query: 1   MAELATIARPYAEALFRVAKAGSLSAWADLVSEMAQAAAHHDVKDMAQNPALSDEQVVST 60
           MAELATIARPYAEALFRVAKAGSL+AW+DLV EMAQ AAH +V+ +AQNP++S +++   
Sbjct: 1   MAELATIARPYAEALFRVAKAGSLAAWSDLVDEMAQVAAHPEVQALAQNPSVSHDKLAEV 60

Query: 61  FSSVLKTPLSVEAKNFVSALVQNGRLTLLPEIAAQFHTLKNAQEGAADAEITSAFELSDA 120
           F++ +KTPLS+EA NFV  LV NGRL LLPEIA QFH LKN  EG+ADA I SAFELSDA
Sbjct: 61  FAAAVKTPLSIEATNFVKTLVDNGRLVLLPEIAQQFHVLKNTSEGSADANIVSAFELSDA 120

Query: 121 QLKDVVVTLEKKFGRKLTPTVKVDNALIGGVRVVVGDEVFDTSVRAK 167
           Q+KDVV  LEKKFGRKL P+V VD++LIGGVRVVVGDEVFDTSVRAK
Sbjct: 121 QVKDVVSALEKKFGRKLNPSVTVDSSLIGGVRVVVGDEVFDTSVRAK 167


>F1W3F1.1 F1W3F1_9BURK ATP synthase delta chain
          Length = 177

 Score =  238 bits (608), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 140/177 (79%)

Query: 1   MAELATIARPYAEALFRVAKAGSLSAWADLVSEMAQAAAHHDVKDMAQNPALSDEQVVST 60
           MAELATIARPYAEALFR+AK   L+AW+ LV+EMAQ AA  D++ +  NP +SD  + +T
Sbjct: 1   MAELATIARPYAEALFRIAKTEDLTAWSGLVAEMAQVAADPDLQALTHNPKISDADIAAT 60

Query: 61  FSSVLKTPLSVEAKNFVSALVQNGRLTLLPEIAAQFHTLKNAQEGAADAEITSAFELSDA 120
           F S +K+P+  EA NF++ L++NGRLTLLPEI AQF  LKN +EGAADA+I SAFE++  
Sbjct: 61  FLSAVKSPVGAEANNFITMLIENGRLTLLPEIDAQFQVLKNTEEGAADADIVSAFEMTPE 120

Query: 121 QLKDVVVTLEKKFGRKLTPTVKVDNALIGGVRVVVGDEVFDTSVRAKLQQLHVALAA 177
           Q+  +++TLEKKFGRKL P V +D  LIGGVRVVVGDEV DTSVRAKLQQ+ VAL A
Sbjct: 121 QVSALIITLEKKFGRKLNPLVSIDATLIGGVRVVVGDEVLDTSVRAKLQQMQVALTA 177


>D8N3S3.1 D8N3S3_RALSO ATP synthase subunit delta 3
          Length = 178

 Score =  228 bits (581), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/177 (66%), Positives = 135/177 (76%)

Query: 1   MAELATIARPYAEALFRVAKAGSLSAWADLVSEMAQAAAHHDVKDMAQNPALSDEQVVST 60
           MAELAT+ARPYAEALFRVAKAG+L AW++LVSEM Q AA  D+K +A +P LS   V   
Sbjct: 1   MAELATVARPYAEALFRVAKAGNLGAWSELVSEMGQIAAVPDMKAVADDPKLSKADVAGI 60

Query: 61  FSSVLKTPLSVEAKNFVSALVQNGRLTLLPEIAAQFHTLKNAQEGAADAEITSAFELSDA 120
           F S LK+P+S EAK  V  LV N RL+LLPEIAAQFH L+NA EGAAD EITSAF L  A
Sbjct: 61  FLSALKSPVSHEAKELVGLLVANKRLSLLPEIAAQFHVLRNASEGAADVEITSAFPLEGA 120

Query: 121 QLKDVVVTLEKKFGRKLTPTVKVDNALIGGVRVVVGDEVFDTSVRAKLQQLHVALAA 177
            L D+V TLE+KFG+KL P V +D +LIGGVRV VGDEV DTSVRA+L Q+  AL A
Sbjct: 121 PLTDLVATLERKFGKKLQPHVTIDPSLIGGVRVQVGDEVLDTSVRARLTQMQSALTA 177