BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0247.p (562 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZQ2.1 D8IZQ2_HERSS Assimilatory nitrate reductase large subun... 878 0.0 Q46RM3.1 Q46RM3_CUPPJ Assimilatory nitrate reductase (NADH) alph... 817 0.0 B3R8W1.1 B3R8W1_CUPTR Nitrate reductase; prokaryotic molybdopter... 816 0.0 Q0K356.1 Q0K356_CUPNH Nitrate reductase [NADH] EC=1.7.1.1 806 0.0 B1G508.1 B1G508_9BURK Molybdopterin oxidoreductase 796 0.0 >D8IZQ2.1 D8IZQ2_HERSS Assimilatory nitrate reductase large subunit protein EC=1.7.99.4 Length = 922 Score = 878 bits (2269), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/554 (76%), Positives = 466/554 (84%), Gaps = 1/554 (0%) Query: 2 IAITGDELHPANKGRLCVKGSALGETVDLSGRLLHPKVRDADGTLQRVSWDAALDKVAGG 61 I I GD HPAN GRLCVKGSALGETVDL GRLLHP++RDA G LQ+++WD ALD VA Sbjct: 38 IGIQGDAQHPANFGRLCVKGSALGETVDLDGRLLHPQLRDAQGQLQQLAWDQALDHVASK 97 Query: 62 LRGIIDRHGADAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRA 121 II HG DAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRA Sbjct: 98 FSAIIAEHGPDAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRA 157 Query: 122 FGEDLVPICYEDLELADMVVLVGSNTAWCHPILFQRIAKAKENRPEMKLIVIDPRRTATC 181 FGEDLVP+CYEDLELAD+VVLVGSN AWCHPILFQRIA+ KE RP ++L+VIDPRRTATC Sbjct: 158 FGEDLVPVCYEDLELADLVVLVGSNAAWCHPILFQRIARLKETRPALRLVVIDPRRTATC 217 Query: 182 ELADMHLPVKAGTDVWLFNGLMSFLAHRGARDNAFVDAHTSGLGEALAIADADCADPNEI 241 ELAD+HLP+K GTDVWLFNGLMS+LAHRG RDNAF++AHT G EALA+ADADCADP + Sbjct: 218 ELADLHLPIKPGTDVWLFNGLMSYLAHRGLRDNAFIEAHTKGFDEALAVADADCADPATV 277 Query: 242 ARICKVDVNDLLAFYQMFADTEKVITAFSMGVNQSSAGTDKVNSIINVHLISGRIGKPGM 301 AR+CK+D+ DLLAFY+ FA+TEKV+T FSMGVNQSSAGTDKVNSIIN HL +GRIGKPGM Sbjct: 278 ARLCKIDLKDLLAFYEAFANTEKVVTGFSMGVNQSSAGTDKVNSIINCHLATGRIGKPGM 337 Query: 302 GPFSITGQPNAMGGREVGGLANMLAAHMDLDNALHRDTVQTFWGSPHMADKPGLKAVDLF 361 GPFSITGQPNAMGGREVGGLANMLAAHMDLD LHR VQ FW SP +ADKPGLKAVD+F Sbjct: 338 GPFSITGQPNAMGGREVGGLANMLAAHMDLDQPLHRQIVQDFWQSPRIADKPGLKAVDMF 397 Query: 362 NAIEAGRIKAVWIMATNPMVSMPDANVVQRALSKCELVVASDIIEGTDTNAFAHVLLPAL 421 AIE GRIKAVWIMATNPMVS+PDA++VQRAL KCELVV+SD+I TDTNA AHVLLPAL Sbjct: 398 RAIEEGRIKAVWIMATNPMVSLPDADLVQRALQKCELVVSSDVITQTDTNALAHVLLPAL 457 Query: 422 GWGEKDGTVTNSERRISRQRAFLTAPGEARPDWKIICDVAIRMGYRGFDFAGVHAIFDEH 481 WGEKDGTVTNSERRISRQRAFL+APGEAR DW+IICDVA RMG+ GFDFAG H IFDEH Sbjct: 458 AWGEKDGTVTNSERRISRQRAFLSAPGEARGDWRIICDVARRMGFDGFDFAGPHEIFDEH 517 Query: 482 ARLSSYRNGPPQIAGNSMRVFNLDGLIGMNKQQFDQLQPIQWPVTRDKHNGDAVGAXVTR 541 ARLS++RNG A RVFNL GL GM++ +D L PIQWPV R + A V Sbjct: 518 ARLSAHRNGEAD-ASRVRRVFNLAGLTGMDRAAYDALAPIQWPVQRLSDGSVSGTARVLE 576 Query: 542 DKHNGDAVGAVRRI 555 D A G R + Sbjct: 577 DHRFSHADGRARFV 590 >Q46RM3.1 Q46RM3_CUPPJ Assimilatory nitrate reductase (NADH) alpha subunit apoprotein EC=1.7.1.1 Length = 906 Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/524 (74%), Positives = 449/524 (85%), Gaps = 7/524 (1%) Query: 2 IAITGDELHPANKGRLCVKGSALGETVDLSGRLLHPKVRDADGTLQRVSWDAALDKVAGG 61 + I GD HP+N GRLCVKGSALGETVDL GRLLHPKVR DGTL++VSWD ALD VA G Sbjct: 40 VEIAGDAEHPSNHGRLCVKGSALGETVDLQGRLLHPKVRHEDGTLEQVSWDHALDTVAQG 99 Query: 62 LRGIIDRHGADAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRA 121 I+ HG DAVALYVSGQLLTEDYY+ANKLMKG+IG+ANIDTNSRLCMSSAVAGHKRA Sbjct: 100 FSRIVREHGPDAVALYVSGQLLTEDYYVANKLMKGFIGTANIDTNSRLCMSSAVAGHKRA 159 Query: 122 FGEDLVPICYEDLELADMVVLVGSNTAWCHPILFQRIAKAKENRPEMKLIVIDPRRTATC 181 FGEDLVP YEDLELAD+VVLVGSNTAWCHPILFQR++KAKE RPEMK++ IDPRRTATC Sbjct: 160 FGEDLVPGNYEDLELADLVVLVGSNTAWCHPILFQRLSKAKEARPEMKIVAIDPRRTATC 219 Query: 182 ELADMHLPVKAGTDVWLFNGLMSFLAHRGARDNAFVDAHTSGLGEALAIADADCADPNEI 241 ELAD+HLPV+AGTDVWLFNGL+S+LA G D AFV A T+GL +AL A DC+DP + Sbjct: 220 ELADLHLPVRAGTDVWLFNGLLSYLAREGKADTAFVAASTAGLDDALQ-ATVDCSDPKAV 278 Query: 242 ARICKVDVNDLLAFYQMFADTEKVITAFSMGVNQSSAGTDKVNSIINVHLISGRIGKPGM 301 AR CK+DV D+LAFY++FADTEKV+TAFS GVNQSSAGTDKVNSIIN HL++GR+G+ GM Sbjct: 279 ARACKLDVEDVLAFYRLFADTEKVVTAFSQGVNQSSAGTDKVNSIINCHLLTGRMGRAGM 338 Query: 302 GPFSITGQPNAMGGREVGGLANMLAAHMDLDNALHRDTVQTFWGSPHMADKPGLKAVDLF 361 GPFS+TGQPNAMGGREVGGLANMLAAHM+L N LHR+ VQ W SP MAD+ GLKAVDLF Sbjct: 339 GPFSLTGQPNAMGGREVGGLANMLAAHMELANPLHREIVQDLWQSPVMADQAGLKAVDLF 398 Query: 362 NAIEAGRIKAVWIMATNPMVSMPDANVVQRALSKCELVVASDIIEGTDTNAFAHVLLPAL 421 NAIE GR+KAVW++ATNP+VS+PDA+ V+RAL+KCELVV+SDIIE TDTN AHVLLPAL Sbjct: 399 NAIEQGRVKAVWVIATNPVVSLPDADQVRRALAKCELVVSSDIIERTDTNDAAHVLLPAL 458 Query: 422 GWGEKDGTVTNSERRISRQRAFLTAPGEARPDWKIICDVAIRMGYRGFDFAGVHAIFDEH 481 GWGEKDGTVTNSERRISRQRAFL APGEAR DW+++CDVA RMG+ GFD+AG H IFDEH Sbjct: 459 GWGEKDGTVTNSERRISRQRAFLPAPGEARADWRVLCDVAQRMGFAGFDYAGPHEIFDEH 518 Query: 482 ARLSSYRNGPPQIAGNSMRVFNLDGLIGMNKQQFDQLQPIQWPV 525 ARLS++RN + R F++ G+ GM+K +D +P+QWPV Sbjct: 519 ARLSAWRN------DEAPRAFDIGGMAGMDKDSYDTFEPLQWPV 556 >B3R8W1.1 B3R8W1_CUPTR Nitrate reductase; prokaryotic molybdopterin-containing oxidoreductase family; NasA/napA/narB subfamily EC=1.7.99.4 Length = 907 Score = 816 bits (2109), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/524 (74%), Positives = 451/524 (86%), Gaps = 6/524 (1%) Query: 2 IAITGDELHPANKGRLCVKGSALGETVDLSGRLLHPKVRDADGTLQRVSWDAALDKVAGG 61 + I GD HP+N+GRLCVKGSALGETVDL GRLLHPK+RDADG L++VSWD ALD VA G Sbjct: 40 VEIAGDAQHPSNQGRLCVKGSALGETVDLEGRLLHPKLRDADGQLRQVSWDHALDTVAQG 99 Query: 62 LRGIIDRHGADAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRA 121 II RHG D+VALYVSGQLLTEDYY+ANKLMKG+IGSANIDTNSRLCMSSAVAGHKRA Sbjct: 100 FTDIIRRHGPDSVALYVSGQLLTEDYYVANKLMKGFIGSANIDTNSRLCMSSAVAGHKRA 159 Query: 122 FGEDLVPICYEDLELADMVVLVGSNTAWCHPILFQRIAKAKENRPEMKLIVIDPRRTATC 181 FGEDLVP YEDLELAD+VVLVGSNTAWCHPILFQR+++AKE RPEMK++ IDPRRTATC Sbjct: 160 FGEDLVPGNYEDLELADLVVLVGSNTAWCHPILFQRLSRAKEARPEMKIVAIDPRRTATC 219 Query: 182 ELADMHLPVKAGTDVWLFNGLMSFLAHRGARDNAFVDAHTSGLGEALAIADADCADPNEI 241 ELAD+HL V+ GTDVWLFNGL+S+LA G + AFV A T+GL EAL AD CADP + Sbjct: 220 ELADLHLAVRPGTDVWLFNGLLSYLAREGHANAAFVGASTAGLDEALQAADDTCADPAAV 279 Query: 242 ARICKVDVNDLLAFYQMFADTEKVITAFSMGVNQSSAGTDKVNSIINVHLISGRIGKPGM 301 AR CK++V D+LAFYQ+FA TE+ +TAFS GVNQSSAGTDKVNSIIN HL++GRIG+PGM Sbjct: 280 ARACKLNVQDVLAFYQLFAQTERTVTAFSQGVNQSSAGTDKVNSIINCHLLTGRIGQPGM 339 Query: 302 GPFSITGQPNAMGGREVGGLANMLAAHMDLDNALHRDTVQTFWGSPHMADKPGLKAVDLF 361 GPFS+TGQPNAMGGREVGGLANMLAAHM+L N LHR+ VQ FW SP MAD+PGLKAV+LF Sbjct: 340 GPFSLTGQPNAMGGREVGGLANMLAAHMELANPLHREVVQGFWQSPAMADRPGLKAVELF 399 Query: 362 NAIEAGRIKAVWIMATNPMVSMPDANVVQRALSKCELVVASDIIEGTDTNAFAHVLLPAL 421 AIEAGR+KAVW++ATNP+VS+PDA+ +RAL++CELVV+SDIIE TDTNA A VLLPAL Sbjct: 400 EAIEAGRVKAVWVIATNPVVSLPDADQARRALARCELVVSSDIIEHTDTNAAARVLLPAL 459 Query: 422 GWGEKDGTVTNSERRISRQRAFLTAPGEARPDWKIICDVAIRMGYRGFDFAGVHAIFDEH 481 GWGEKDGTVTNSERRISRQRAFL APGEAR DW I+C+VA RMG+ GFD+AG H IFDEH Sbjct: 460 GWGEKDGTVTNSERRISRQRAFLPAPGEARADWDILCEVARRMGFSGFDYAGPHQIFDEH 519 Query: 482 ARLSSYRNGPPQIAGNSMRVFNLDGLIGMNKQQFDQLQPIQWPV 525 ARLS++RN ++ R F++ GL G++ ++D L+P+QWPV Sbjct: 520 ARLSAWRN------DDAPRAFDIGGLAGLDTARYDALEPVQWPV 557 >Q0K356.1 Q0K356_CUPNH Nitrate reductase [NADH] EC=1.7.1.1 Length = 909 Score = 806 bits (2083), Expect = 0.0, Method: Compositional matrix adjust. Identities = 396/524 (75%), Positives = 455/524 (86%), Gaps = 6/524 (1%) Query: 2 IAITGDELHPANKGRLCVKGSALGETVDLSGRLLHPKVRDADGTLQRVSWDAALDKVAGG 61 + I GD HP+N GRLCVKGSALGETVDL GRLLHPKVR DG+LQ+VSWD ALD VA G Sbjct: 40 VEIAGDAQHPSNHGRLCVKGSALGETVDLEGRLLHPKVRGTDGSLQQVSWDHALDTVAQG 99 Query: 62 LRGIIDRHGADAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRA 121 I+ RHG D+VALYVSGQLLTEDYYIANKLMKG+IGSANIDTNSRLCMSSAVAGHKRA Sbjct: 100 FSDIVRRHGPDSVALYVSGQLLTEDYYIANKLMKGFIGSANIDTNSRLCMSSAVAGHKRA 159 Query: 122 FGEDLVPICYEDLELADMVVLVGSNTAWCHPILFQRIAKAKENRPEMKLIVIDPRRTATC 181 FGEDLVP YEDLELAD+VVLVGSNTAWCHPILFQR+++AKE RPEMK++ IDPRRTATC Sbjct: 160 FGEDLVPGNYEDLELADLVVLVGSNTAWCHPILFQRLSRAKEARPEMKIVAIDPRRTATC 219 Query: 182 ELADMHLPVKAGTDVWLFNGLMSFLAHRGARDNAFVDAHTSGLGEALAIADADCADPNEI 241 ELAD+HL ++ GTDVWLFNGL+S+LA G + AFV A T+GL EAL ADA CADP + Sbjct: 220 ELADLHLAIRPGTDVWLFNGLLSYLAREGRTNAAFVAASTAGLDEALQAADAACADPAAV 279 Query: 242 ARICKVDVNDLLAFYQMFADTEKVITAFSMGVNQSSAGTDKVNSIINVHLISGRIGKPGM 301 AR CK+DV D+LAFYQ+FADTEK +TAFS GVNQSSAGTDKVNSIIN HL++GRIG PGM Sbjct: 280 ARACKLDVQDVLAFYQLFADTEKTVTAFSQGVNQSSAGTDKVNSIINCHLLTGRIGAPGM 339 Query: 302 GPFSITGQPNAMGGREVGGLANMLAAHMDLDNALHRDTVQTFWGSPHMADKPGLKAVDLF 361 GPFS+TGQPNAMGGREVGGLANMLAAHM+L N LHRD VQ+FW SP +AD+PGLKAV+LF Sbjct: 340 GPFSLTGQPNAMGGREVGGLANMLAAHMELANPLHRDIVQSFWQSPVVADRPGLKAVELF 399 Query: 362 NAIEAGRIKAVWIMATNPMVSMPDANVVQRALSKCELVVASDIIEGTDTNAFAHVLLPAL 421 AIEAGR+KAVW++ATNP+VS+PDA+ V+RAL++CELVV SDIIE TDTNA AHVLLPAL Sbjct: 400 EAIEAGRVKAVWVIATNPVVSLPDADQVRRALARCELVVTSDIIERTDTNAAAHVLLPAL 459 Query: 422 GWGEKDGTVTNSERRISRQRAFLTAPGEARPDWKIICDVAIRMGYRGFDFAGVHAIFDEH 481 GWGEKDGTVTNSERRISRQRAFL APGEAR DW+I+CDVA RMG+ GFD+AGVH IFDEH Sbjct: 460 GWGEKDGTVTNSERRISRQRAFLPAPGEARADWRILCDVARRMGFDGFDYAGVHEIFDEH 519 Query: 482 ARLSSYRNGPPQIAGNSMRVFNLDGLIGMNKQQFDQLQPIQWPV 525 ARLS++RN + RVF++ GL G++++ +D L+P+QWP+ Sbjct: 520 ARLSAWRN------DAAPRVFDIGGLAGLDQEHYDALEPVQWPL 557 >B1G508.1 B1G508_9BURK Molybdopterin oxidoreductase Length = 943 Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/536 (71%), Positives = 443/536 (82%), Gaps = 14/536 (2%) Query: 4 ITGDELHPANKGRLCVKGSALGETVDLSGRLLHPKVRD-ADGTLQRVSWDAALDKVAGGL 62 I GDE HPAN GRLCVKGSALGET+ L GRLLHPK+R+ A G L+ VSWD A+D VAGG Sbjct: 42 IAGDEQHPANFGRLCVKGSALGETIGLEGRLLHPKMRERASGALRDVSWDEAIDAVAGGF 101 Query: 63 RGIIDRHGADAVALYVSGQLLTEDYYIANKLMKGYIGSANIDTNSRLCMSSAVAGHKRAF 122 R I+D HG DAVALYVSGQLLTEDYY+ANKLMKGY+GSANIDTNSRLCMSS+VAGHKRAF Sbjct: 102 RRIVDEHGPDAVALYVSGQLLTEDYYVANKLMKGYVGSANIDTNSRLCMSSSVAGHKRAF 161 Query: 123 GEDLVPICYEDLELADMVVLVGSNTAWCHPILFQRIAKAKENRPEMKLIVIDPRRTATCE 182 GED+VP+CYEDLELAD+VVLVGSNTAWCHPILFQRI K KE RP+MK++VIDPR TATCE Sbjct: 162 GEDVVPVCYEDLELADLVVLVGSNTAWCHPILFQRIVKIKEARPDMKVVVIDPRYTATCE 221 Query: 183 LADMHLPVKAGTDVWLFNGLMSFLAHRGARDNAFVDAHTSGLGEALAIAD-------ADC 235 +AD+HLP+ AG+DV LFNGL+SFLA GA D FVDAHT+G +ALA A Sbjct: 222 MADLHLPLSAGSDVRLFNGLLSFLAEHGAIDAQFVDAHTNGFAQALAAASEGEVSGTTAA 281 Query: 236 ADPNEIARICKVDVNDLLAFYQMFADTEKVITAFSMGVNQSSAGTDKVNSIINVHLISGR 295 D + A+ CKVD +DLL FY++FA TE+V+T +S GVNQSSAGTDKVNSIIN HL++GR Sbjct: 282 FDLAQCAKACKVDPHDLLEFYRLFARTERVVTVYSQGVNQSSAGTDKVNSIINCHLLTGR 341 Query: 296 IGKPGMGPFSITGQPNAMGGREVGGLANMLAAHMDLDNALHRDTVQTFWGSPHMADKPGL 355 IGKPGMGPFS TGQPNAMGGREVGGLAN LAAH++LD+A+HR+ VQ FWG+P +A + GL Sbjct: 342 IGKPGMGPFSFTGQPNAMGGREVGGLANTLAAHLELDDAMHRELVQQFWGAPVIASRAGL 401 Query: 356 KAVDLFNAIEAGRIKAVWIMATNPMVSMPDANVVQRALSKCELVVASDIIEGTDTNAFAH 415 KAV+LF AIE GR+KAVWIM TNP+VS+PD + +RAL++CELVV+SDI+E TDTNAFAH Sbjct: 402 KAVELFEAIEEGRVKAVWIMGTNPVVSLPDGDQAKRALARCELVVSSDIVERTDTNAFAH 461 Query: 416 VLLPALGWGEKDGTVTNSERRISRQRAFLTAPGEARPDWKIICDVAIRMGYRGFDFAGVH 475 VLLPALGWGEKDGTVTNSERRISRQRAFL APGEAR DW+IICDVA RMGY GF+FA Sbjct: 462 VLLPALGWGEKDGTVTNSERRISRQRAFLPAPGEARADWQIICDVAKRMGYAGFEFASQQ 521 Query: 476 AIFDEHARLSSYRNGPPQIAGNSM------RVFNLDGLIGMNKQQFDQLQPIQWPV 525 IFDEHARLS++RNG + +S R FNL GL+G+ + LQP+QWPV Sbjct: 522 EIFDEHARLSAWRNGESESQSHSQHGDSVRRAFNLAGLVGLGSDGYSSLQPVQWPV 577