BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0246.p (293 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZQ2.1 D8IZQ2_HERSS Assimilatory nitrate reductase large subun... 504 e-141 Q0K356.1 Q0K356_CUPNH Nitrate reductase [NADH] EC=1.7.1.1 473 e-131 B3R8W1.1 B3R8W1_CUPTR Nitrate reductase; prokaryotic molybdopter... 471 e-131 Q46RM3.1 Q46RM3_CUPPJ Assimilatory nitrate reductase (NADH) alph... 464 e-128 E8YH28.1 E8YH28_9BURK Molybdopterin oxidoreductase 455 e-126 >D8IZQ2.1 D8IZQ2_HERSS Assimilatory nitrate reductase large subunit protein EC=1.7.99.4 Length = 922 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 237/293 (80%), Positives = 259/293 (88%) Query: 1 MTRTGKSARLADHVPESFVDMHPQDALRYGVREGSLARISSRWGAMVARVQHSGGIARGS 60 MTRTG+SA LA H+PESF+D+HPQDAL YGVREG LARISSRWGAMVARVQH GGIARGS Sbjct: 621 MTRTGRSATLASHIPESFIDIHPQDALLYGVREGGLARISSRWGAMVARVQHGGGIARGS 680 Query: 61 VFVPIHWSNQTASDARVGALVNPVVDPVSGEPEFKHTPVNIEEFGVSWHGFILSRKALAL 120 VFVPIHW+ Q+ASDARVGA+VNPVVDPVSGEPEFKHTPV IEEF VSWHGFIL+R AL L Sbjct: 681 VFVPIHWNGQSASDARVGAVVNPVVDPVSGEPEFKHTPVAIEEFRVSWHGFILTRHALDL 740 Query: 121 DEITHWTRIQGRDFARYELAGRNAIGDHSAWARKLLGVHDIDADWLEYEDRTAGVYRAVH 180 D++THWTR+QGRDF RYELAGRN I DHSAWAR LLGV D ADWLEYED + G YRAVH Sbjct: 741 DQVTHWTRVQGRDFMRYELAGRNHIPDHSAWARSLLGVQDPQADWLEYEDLSDGSYRAVH 800 Query: 181 VDNDRIDMCIFLSKRPDLPSRAWLASLFDKEQLEEADRVGLLIGQPIEKGADTGPTVCSC 240 V DRIDMC+F+S RPDLPSR+WLA LF KE+LEEADRVGLL+GQPIEKGADTGPTVCSC Sbjct: 801 VVEDRIDMCLFMSARPDLPSRSWLAGLFAKEKLEEADRVGLLVGQPIEKGADTGPTVCSC 860 Query: 241 FGVGRNTICNAVREQGLKTVAEVTACLKAGGNCGSCVPEIRKLMVETMAAETA 293 FGVGRNTICNA+R QGL V +VTACLKAGGNCGSCVPEI+KL+VE + A Sbjct: 861 FGVGRNTICNAIRTQGLSEVGQVTACLKAGGNCGSCVPEIKKLIVEVRLQDAA 913 >Q0K356.1 Q0K356_CUPNH Nitrate reductase [NADH] EC=1.7.1.1 Length = 909 Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust. Identities = 218/293 (74%), Positives = 255/293 (87%) Query: 1 MTRTGKSARLADHVPESFVDMHPQDALRYGVREGSLARISSRWGAMVARVQHSGGIARGS 60 MTRTGKSA+LADH+PE FVDMHPQDAL GV EG LAR+S+RWGAMVARV+H GGI RGS Sbjct: 617 MTRTGKSAKLADHLPEPFVDMHPQDALLSGVGEGKLARVSTRWGAMVARVRHGGGIPRGS 676 Query: 61 VFVPIHWSNQTASDARVGALVNPVVDPVSGEPEFKHTPVNIEEFGVSWHGFILSRKALAL 120 VFVPIHW+ Q +SDARVGALVNPVVDPVSGEPEFKHTPV +E FGV+WHGF+LSR AL Sbjct: 677 VFVPIHWNGQFSSDARVGALVNPVVDPVSGEPEFKHTPVRVEPFGVNWHGFVLSRSALPA 736 Query: 121 DEITHWTRIQGRDFARYELAGRNAIGDHSAWARKLLGVHDIDADWLEYEDRTAGVYRAVH 180 + +T+WTR+QGR F RYE AGR+ + D +AWAR LLGV D DADWLEYEDRTAGVY A + Sbjct: 737 EALTYWTRVQGRQFQRYEFAGRDTVADRTAWARALLGVTDPDADWLEYEDRTAGVYHAGY 796 Query: 181 VDNDRIDMCIFLSKRPDLPSRAWLASLFDKEQLEEADRVGLLIGQPIEKGADTGPTVCSC 240 V NDR++ C+++S RP+LPSRAWLA LF +E+LE+ADR+GLL+GQP+EKGADTGPTVCSC Sbjct: 797 VVNDRLEACVYVSTRPELPSRAWLAGLFGRERLEDADRIGLLLGQPMEKGADTGPTVCSC 856 Query: 241 FGVGRNTICNAVREQGLKTVAEVTACLKAGGNCGSCVPEIRKLMVETMAAETA 293 FGVGRNTIC+AVR+ LKT AE+TAC+KAGGNCGSCVPE++KL+VE AE A Sbjct: 857 FGVGRNTICDAVRKHDLKTPAEITACVKAGGNCGSCVPELKKLLVEVRVAEVA 909 >B3R8W1.1 B3R8W1_CUPTR Nitrate reductase; prokaryotic molybdopterin-containing oxidoreductase family; NasA/napA/narB subfamily EC=1.7.99.4 Length = 907 Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust. Identities = 217/293 (74%), Positives = 253/293 (86%) Query: 1 MTRTGKSARLADHVPESFVDMHPQDALRYGVREGSLARISSRWGAMVARVQHSGGIARGS 60 MTRTGKSARLADH+PE FVDMHPQDAL GV EG LAR+S+RWGAMVARV+H GGI RGS Sbjct: 615 MTRTGKSARLADHLPEPFVDMHPQDALLCGVGEGKLARVSTRWGAMVARVRHGGGIPRGS 674 Query: 61 VFVPIHWSNQTASDARVGALVNPVVDPVSGEPEFKHTPVNIEEFGVSWHGFILSRKALAL 120 VFVPIHW+ Q +SDARVGALVNPVVDPVSGEPEFKHTPV +E FGV WHGF+LSR+ L Sbjct: 675 VFVPIHWNGQFSSDARVGALVNPVVDPVSGEPEFKHTPVRVEPFGVHWHGFMLSRRPLPA 734 Query: 121 DEITHWTRIQGRDFARYELAGRNAIGDHSAWARKLLGVHDIDADWLEYEDRTAGVYRAVH 180 + +T+WTR+QGR F RYE AGR+ + D +AWAR LLGV D DADWLEYEDR AGVY A H Sbjct: 735 EALTYWTRVQGRQFQRYEFAGRDTVADRTAWARTLLGVTDPDADWLEYEDRAAGVYHAGH 794 Query: 181 VDNDRIDMCIFLSKRPDLPSRAWLASLFDKEQLEEADRVGLLIGQPIEKGADTGPTVCSC 240 V +DR++ C+++S RP+LPSRAWLA LF +E+LE+ADR+GLL+GQP+EKGADTGPTVCSC Sbjct: 795 VVDDRLEACVYVSTRPELPSRAWLAGLFGRERLEDADRIGLLLGQPMEKGADTGPTVCSC 854 Query: 241 FGVGRNTICNAVREQGLKTVAEVTACLKAGGNCGSCVPEIRKLMVETMAAETA 293 FGVGRNTIC+AVR+ LKT AE+TAC+KAGGNCGSCVPE++KL+VE AE A Sbjct: 855 FGVGRNTICDAVRKHDLKTPAEITACVKAGGNCGSCVPELKKLLVEVRVAEAA 907 >Q46RM3.1 Q46RM3_CUPPJ Assimilatory nitrate reductase (NADH) alpha subunit apoprotein EC=1.7.1.1 Length = 906 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 212/293 (72%), Positives = 254/293 (86%) Query: 1 MTRTGKSARLADHVPESFVDMHPQDALRYGVREGSLARISSRWGAMVARVQHSGGIARGS 60 MTRTGKSA+LADH+PE FVDMHPQDAL GV EG LAR+++RWGAMVARV+H GGI RGS Sbjct: 614 MTRTGKSAKLADHLPEPFVDMHPQDALLCGVGEGKLARVATRWGAMVARVRHGGGIPRGS 673 Query: 61 VFVPIHWSNQTASDARVGALVNPVVDPVSGEPEFKHTPVNIEEFGVSWHGFILSRKALAL 120 VFVPIHW+ Q +SDARVGALVNPVVDPVSGEPEFKHTPV++E FGV+WHGF+LSR+ L Sbjct: 674 VFVPIHWNGQFSSDARVGALVNPVVDPVSGEPEFKHTPVSVEPFGVNWHGFVLSRRELPA 733 Query: 121 DEITHWTRIQGRDFARYELAGRNAIGDHSAWARKLLGVHDIDADWLEYEDRTAGVYRAVH 180 D +T+WTR+QG+ F RYE AGR AI D +AWAR LLGV D +ADWLEYEDR+AG Y A + Sbjct: 734 DTLTYWTRVQGKRFQRYEFAGREAIVDRAAWARSLLGVTDPEADWLEYEDRSAGTYHAGY 793 Query: 181 VDNDRIDMCIFLSKRPDLPSRAWLASLFDKEQLEEADRVGLLIGQPIEKGADTGPTVCSC 240 V NDR++ C++++ RP+LPSR+WLA LF +++LE+ADR+GLL+GQPIEKGAD GPTVCSC Sbjct: 794 VVNDRLEACVYVATRPELPSRSWLAELFGRDRLEDADRIGLLMGQPIEKGADAGPTVCSC 853 Query: 241 FGVGRNTICNAVREQGLKTVAEVTACLKAGGNCGSCVPEIRKLMVETMAAETA 293 FGVGRNTIC+AVR+ GL T AE+TAC+KAGGNCGSCVPE++KL+VE AE A Sbjct: 854 FGVGRNTICDAVRKHGLTTPAEITACVKAGGNCGSCVPELKKLLVEVRVAEVA 906 >E8YH28.1 E8YH28_9BURK Molybdopterin oxidoreductase Length = 933 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 213/293 (72%), Positives = 251/293 (85%), Gaps = 3/293 (1%) Query: 1 MTRTGKSARLADHVPESFVDMHPQDALRYGVREGSLARISSRWGAMVARVQHSGGIARGS 60 MTRTGKS +LA HV E+FVD+HPQDAL GVREG LAR+SSRWGAMVARVQ+ GG+ RGS Sbjct: 636 MTRTGKSEKLAGHVTEAFVDLHPQDALLCGVREGDLARVSSRWGAMVARVQYGGGMPRGS 695 Query: 61 VFVPIHWSNQTASDARVGALVNPVVDPVSGEPEFKHTPVNIEEFGVSWHGFILSRKALAL 120 VFVPIHW++Q ASDARVGA+VNPVVDPVSGEPEFKHTPV I++F V+WHGF LSR+A L Sbjct: 696 VFVPIHWNDQVASDARVGAVVNPVVDPVSGEPEFKHTPVRIDKFHVAWHGFSLSRRAPRL 755 Query: 121 DEITHWTRIQGRDFARYELAGRNAIGDHS---AWARKLLGVHDIDADWLEYEDRTAGVYR 177 D +T+WTR+QG+ RYELAGR +G+ AWAR L GV D ADWLEYEDR AG+YR Sbjct: 756 DGVTYWTRVQGKQCVRYELAGRTTLGERGERGAWARALFGVDDAQADWLEYEDRAAGIYR 815 Query: 178 AVHVDNDRIDMCIFLSKRPDLPSRAWLASLFDKEQLEEADRVGLLIGQPIEKGADTGPTV 237 AVH+ +DRI+ C+FLS RP+LP+R WLASLF K++L+EADR+G+L GQPI KGADTGPTV Sbjct: 816 AVHLVDDRIENCVFLSARPELPAREWLASLFAKDRLDEADRIGVLSGQPIGKGADTGPTV 875 Query: 238 CSCFGVGRNTICNAVREQGLKTVAEVTACLKAGGNCGSCVPEIRKLMVETMAA 290 CSCFGVGRNTIC A+REQGLKT AE+TACLKAGGNCGSCVPE++KL+++T A Sbjct: 876 CSCFGVGRNTICTAIREQGLKTAAEITACLKAGGNCGSCVPELKKLLIDTELA 928