BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0230.p         (67 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IT70.1 D8IT70_HERSS DNA-directed RNA polymerase subunit omega ...   135   1e-30
A6SXM0.1 RPOZ_JANMA DNA-directed RNA polymerase subunit omega EC...   131   3e-29
A4G6Y1.1 RPOZ_HERAR DNA-directed RNA polymerase subunit omega EC...   130   6e-29
D8P132.1 D8P132_RALSO DNA-directed RNA polymerase subunit omega ...   130   7e-29
B5SF65.1 B5SF65_RALSO DNA-directed RNA polymerase subunit omega ...   130   7e-29

>D8IT70.1 D8IT70_HERSS DNA-directed RNA polymerase subunit omega EC=2.7.7.6
          Length = 67

 Score =  135 bits (341), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/67 (97%), Positives = 67/67 (100%)

Query: 1  MARITIEDCLKQIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTL+ATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVG+E
Sbjct: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60

Query: 61 MLKKVPA 67
          MLKKVPA
Sbjct: 61 MLKKVPA 67


>A6SXM0.1 RPOZ_JANMA DNA-directed RNA polymerase subunit omega EC=2.7.7.6
          Length = 67

 Score =  131 bits (329), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 65/67 (97%)

Query: 1  MARITIEDCLKQIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTL+ATYRARQLLQGHTPKVDAKDKPTV ALREIAAG VGIE
Sbjct: 1  MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVIALREIAAGHVGIE 60

Query: 61 MLKKVPA 67
          MLKKVP+
Sbjct: 61 MLKKVPS 67


>A4G6Y1.1 RPOZ_HERAR DNA-directed RNA polymerase subunit omega EC=2.7.7.6
          Length = 67

 Score =  130 bits (327), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 63/67 (94%), Positives = 64/67 (95%)

Query: 1  MARITIEDCLKQIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGIE 60
          MARITIEDCLKQIPNRFQLTL ATYRARQLLQGHTPKVDAKDKPTV ALREIAAG VGIE
Sbjct: 1  MARITIEDCLKQIPNRFQLTLCATYRARQLLQGHTPKVDAKDKPTVIALREIAAGHVGIE 60

Query: 61 MLKKVPA 67
          MLKKVP+
Sbjct: 61 MLKKVPS 67


>D8P132.1 D8P132_RALSO DNA-directed RNA polymerase subunit omega 3
          EC=2.7.7.6
          Length = 67

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 66/67 (98%)

Query: 1  MARITIEDCLKQIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGIE 60
          MARIT+EDCLKQIPNRF+L LAATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VGIE
Sbjct: 1  MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60

Query: 61 MLKKVPA 67
          MLKKVP+
Sbjct: 61 MLKKVPS 67


>B5SF65.1 B5SF65_RALSO DNA-directed RNA polymerase subunit omega EC=2.7.7.6
          Length = 67

 Score =  130 bits (326), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 61/67 (91%), Positives = 66/67 (98%)

Query: 1  MARITIEDCLKQIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGIE 60
          MARIT+EDCLKQIPNRF+L LAATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VGIE
Sbjct: 1  MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60

Query: 61 MLKKVPA 67
          MLKKVP+
Sbjct: 61 MLKKVPS 67