BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0227.p (249 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT68.1 D8IT68_HERSS LysR family transcription regulator protein 276 1e-72 C5CRG5.1 C5CRG5_VARPS Transcriptional regulator, LysR family 215 4e-54 E6V001.1 E6V001_VARPD Transcriptional regulator, LysR family 213 2e-53 Q7NT11.1 Q7NT11_CHRVO Probable transcriptional regulator 209 3e-52 F2KA74.1 F2KA74_PSEBR Putative Transcription factor, LysR family 209 4e-52 >D8IT68.1 D8IT68_HERSS LysR family transcription regulator protein Length = 324 Score = 276 bits (707), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 136/176 (77%), Positives = 150/176 (85%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLNDI +FV VVRAGSFAAAGRRL MP NTISRRLQ LE ++GVRLLQRSTRQLNMTA Sbjct: 1 MLDLNDIWLFVHVVRAGSFAAAGRRLSMPPNTISRRLQSLEAAMGVRLLQRSTRQLNMTA 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AGREFFERCAPG+EDI+HA ASL++ EP G LRVAAP DFFDNF++EWM EFM YP+ Sbjct: 61 AGREFFERCAPGLEDIEHASASLTESQGEPAGSLRVAAPVDFFDNFSIEWMHEFMHLYPK 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARKLGASHRGLLASPSYLARRG 176 VQLEF+L+D R DLIAEGIDLAFR G LPDSSLVARKL SH L+ASP YL R+G Sbjct: 121 VQLEFVLNDGRADLIAEGIDLAFRGGVLPDSSLVARKLVQSHLALIASPRYLERQG 176 >C5CRG5.1 C5CRG5_VARPS Transcriptional regulator, LysR family Length = 310 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 107/180 (59%), Positives = 140/180 (77%), Gaps = 1/180 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLNDI++FV+VVR GSFA A RRLG+P NT+SRR+Q LE LG RL+QRSTR+L +T+ Sbjct: 1 MLDLNDIAMFVQVVRHGSFAGAARRLGLPPNTVSRRIQQLEAQLGTRLMQRSTRRLTLTS 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG+ F ERCA ++ + AG +L G+++P G++RVAA ADFFD F MEW+A+F+ +P Sbjct: 61 AGQAFHERCAGPVDGLVEAGQALITGSQQPSGLVRVAATADFFDFFPMEWVADFLAAHPL 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARK-LGASHRGLLASPSYLARRGARA 179 V+++F+LSD R DLIAE ID+AFR G LPDS V RK LGA G++ASP+Y+A RGA A Sbjct: 121 VRVDFVLSDARADLIAEQIDIAFRGGALPDSGYVGRKLLGARTDGMVASPAYIAARGAPA 180 >E6V001.1 E6V001_VARPD Transcriptional regulator, LysR family Length = 309 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 106/180 (58%), Positives = 139/180 (77%), Gaps = 1/180 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLN I++FV+VVR GSFA AGRRLG+P NT+SRR+Q LE LG RL+QRSTR+L +T+ Sbjct: 1 MLDLNHIAMFVQVVRHGSFAEAGRRLGLPPNTVSRRIQELEAQLGTRLMQRSTRKLTLTS 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG+ F ERCA ++ + AG +L G++EP G++RVAA ADFFD F MEW+AEF+ P Sbjct: 61 AGQAFHERCAGSVDGLVEAGQALITGSQEPSGLVRVAATADFFDFFPMEWVAEFLAANPL 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARK-LGASHRGLLASPSYLARRGARA 179 V+++F+LSD + DLIA+ ID+AFR G+LPD+ V RK LG GL+ASP+Y+A RGA A Sbjct: 121 VRVDFVLSDAKADLIADQIDVAFRGGELPDTGYVGRKLLGPRTDGLVASPAYIAARGAPA 180 >Q7NT11.1 Q7NT11_CHRVO Probable transcriptional regulator Length = 301 Score = 209 bits (532), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 105/181 (58%), Positives = 140/181 (77%), Gaps = 1/181 (0%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLND+++FV+V R GSFA AGRRLG+P+NT+SRR+Q LE +L RL+QRSTR+L++T+ Sbjct: 1 MLDLNDVALFVQVARLGSFAEAGRRLGLPANTVSRRIQQLENALDSRLMQRSTRKLSLTS 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG F++RCA ++ + AG + + EPGG++RVAA ADFFD MEW+AEF+ +PR Sbjct: 61 AGEAFYQRCAASVDSLLDAGQAQTGDGGEPGGLIRVAATADFFDFLPMEWVAEFLDAHPR 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARKLG-ASHRGLLASPSYLARRGARA 179 V++EF LSD R DLIA+ ID+AFR G+L DS VAR+L A GL+ASP+YLA RGA A Sbjct: 121 VKIEFALSDARADLIADRIDVAFRGGELADSGYVARRLPVAGGGGLVASPAYLASRGAPA 180 Query: 180 A 180 + Sbjct: 181 S 181 >F2KA74.1 F2KA74_PSEBR Putative Transcription factor, LysR family Length = 304 Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 118/239 (49%), Positives = 155/239 (64%), Gaps = 9/239 (3%) Query: 1 MLDLNDISVFVEVVRAGSFAAAGRRLGMPSNTISRRLQLLEESLGVRLLQRSTRQLNMTA 60 MLDLND+++FV+VVR+GSFA A RRLGMPSNT+SRR+Q LE L RLLQRSTR+L +T Sbjct: 1 MLDLNDVALFVQVVRSGSFAEAARRLGMPSNTVSRRVQQLEAQLESRLLQRSTRKLTLTH 60 Query: 61 AGREFFERCAPGIEDIQHAGASLSDGNREPGGILRVAAPADFFDNFAMEWMAEFMQRYPR 120 AG+ F+ERC ++ + AG L G+ EP G++R+AA ADFFD F MEW+A+F+ +PR Sbjct: 61 AGQGFYERCVDAVDGLMDAGQELMMGSEEPSGLVRIAAMADFFDFFPMEWVADFLAAHPR 120 Query: 121 VQLEFLLSDDRVDLIAEGIDLAFRAGQLPDSSLVARKLGASH-RGLLASPSYLARRGARA 179 VQL+F+LSD RVDLIA+ ID+AFR G L DS V R+L + G++ASP+Y+A RG Sbjct: 121 VQLDFVLSDARVDLIADRIDVAFRGGPLQDSGYVGRQLLKNDGDGMVASPAYIAARGTPL 180 Query: 180 AXPGAARRNRWK-SWPGTTAWPLPILHKRRCG-SWRDQMAQRASAWRRACASTPRRACC 236 + A + PG A H R G ++ Q AS + A RRA Sbjct: 181 SLQDLAHHDGVSFGQPGGMA------HWRFVGPDGIEEQVQIASRFHANTAQALRRATV 233