BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0206.p (313 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT49.1 D8IT49_HERSS LysR family transcription regulator protein 528 e-148 B5WW61.1 B5WW61_9BURK Transcriptional regulator, LysR family 426 e-117 B1G8Y9.1 B1G8Y9_9BURK Transcriptional regulator, LysR family 424 e-117 B2SZI6.1 B2SZI6_BURPP Transcriptional regulator, LysR family 423 e-116 D5NCU8.1 D5NCU8_9BURK Transcriptional regulator, LysR family 422 e-116 >D8IT49.1 D8IT49_HERSS LysR family transcription regulator protein Length = 327 Score = 528 bits (1359), Expect = e-148, Method: Compositional matrix adjust. Identities = 254/308 (82%), Positives = 288/308 (93%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQNMR+F RVV+AGSFT AAQQM LTTAHVSRAVADLERHLRTRL+NRTTRRIALTE Sbjct: 2 MDTLQNMRVFARVVEAGSFTQAAQQMGLTTAHVSRAVADLERHLRTRLMNRTTRRIALTE 61 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYLLRC+QI+SYV EAEAEAS AYV+PSGRLRIH MTSFGQRYVIP++S Y KRYPD Sbjct: 62 AGERYLLRCQQIMSYVDEAEAEASAAYVKPSGRLRIHAMTSFGQRYVIPSISGYHKRYPD 121 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 VA+ELTLAQRIPD+LEEG+DVSLVLARELPDSGLI+RQL S +S+LCASP YL+K+G PQ Sbjct: 122 VAVELTLAQRIPDMLEEGYDVSLVLARELPDSGLIYRQLGSTFSMLCASPAYLDKYGAPQ 181 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAIKSNFHVNVAEAMLLSLKEGMGIGV 240 +P +LLNH CLQLVSP+SPLDEW +EGP+G VVA+KSNF VNVAEAML +++EGMGIGV Sbjct: 182 QPADLLNHACLQLVSPISPLDEWILEGPEGGTVVAVKSNFQVNVAEAMLTAIREGMGIGV 241 Query: 241 LPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQD 300 LP+YSAVDALRAGTIVRVLP++R+Q+MGVYALYPSRQYLDAKISTWVDWMHE+VD+ LQ+ Sbjct: 242 LPIYSAVDALRAGTIVRVLPQHRLQNMGVYALYPSRQYLDAKISTWVDWMHETVDRTLQE 301 Query: 301 DHQALDRL 308 DHQAL+RL Sbjct: 302 DHQALERL 309 >B5WW61.1 B5WW61_9BURK Transcriptional regulator, LysR family Length = 312 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 198/306 (64%), Positives = 248/306 (81%), Gaps = 1/306 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQNMR+F+RVV++GSFT AAQ + TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVESGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYL RCEQI++YV +AEAEASDA+ RPSG+L++H MTSFGQ YV+PAVS YQ+RYPD Sbjct: 61 AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVSRYQERYPD 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V IELTLAQR+PDLL+EGFDVSL LA LPDSGL+ ++L S +SI CASP YLE+ G PQ Sbjct: 121 VHIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLERRGVPQ 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAI-KSNFHVNVAEAMLLSLKEGMGIG 239 KP +L H CLQ+VSP+SP D+W +GP+G E+V + + F VNVAEAM +++ EGMG+ Sbjct: 181 KPADLAQHTCLQMVSPISPPDKWTFDGPNGEEIVPLGATTFQVNVAEAMAVAVSEGMGVA 240 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 ++P+YSA+ LR+G +V +LP Y Q M +YALYPSRQYLDAKI TWV+++ + + L Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQQMNLYALYPSRQYLDAKIRTWVEFLRDELPSTLA 300 Query: 300 DDHQAL 305 D + L Sbjct: 301 ADQEEL 306 >B1G8Y9.1 B1G8Y9_9BURK Transcriptional regulator, LysR family Length = 312 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 197/306 (64%), Positives = 247/306 (80%), Gaps = 1/306 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQNMR+F+RVV+AGSFT AAQ + TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYL RCEQI++YV +AEAEASDA+ RPSG+L++H MTSFGQ YV+PAV YQ+RYP+ Sbjct: 61 AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQQRYPE 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V +ELTLAQR+PDLL+EGFDVSL LA LPDSGL+ ++L S +SI+CASP YLEKHG PQ Sbjct: 121 VHVELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIVCASPAYLEKHGVPQ 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAIK-SNFHVNVAEAMLLSLKEGMGIG 239 P +L +H CLQ+V+PV P D+W +GP+G E +A+ + F VNVAEAM +++ GMGIG Sbjct: 181 TPSDLASHACLQMVTPVFPPDKWTFDGPNGEETIALGPATFQVNVAEAMAVAVTSGMGIG 240 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 ++P+YSA+ LR G +VR+LP Y Q+M +YALYPSRQYLDAKI TW++ + + + L Sbjct: 241 LIPIYSAISGLRKGDLVRLLPDYTSQEMNLYALYPSRQYLDAKIRTWIEHLRDELPATLA 300 Query: 300 DDHQAL 305 D L Sbjct: 301 VDEAEL 306 >B2SZI6.1 B2SZI6_BURPP Transcriptional regulator, LysR family Length = 312 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/306 (64%), Positives = 246/306 (80%), Gaps = 1/306 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQNMR+F+RVV+AGSFT AAQ + TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYL RCEQI++YV +AEAEASDA+ RPSG+L++H MTSFGQ YV+PAV YQ+RYPD Sbjct: 61 AGERYLQRCEQILAYVDQAEAEASDAHARPSGKLKVHAMTSFGQHYVVPAVGRYQERYPD 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V IELTLAQR+PDLL+EGFDVSL LA LPDSGL+ ++L S +SI CASP YLE+HG PQ Sbjct: 121 VQIELTLAQRMPDLLDEGFDVSLTLATSLPDSGLVSQRLGSAFSIACASPAYLERHGVPQ 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAI-KSNFHVNVAEAMLLSLKEGMGIG 239 P +L H CLQ+V+PV P ++W +GP+G E +A+ ++F VNVAEAM +++ GMG+G Sbjct: 181 TPADLTRHECLQMVTPVFPTEKWIFDGPNGEETIALGATSFQVNVAEAMAVAVSSGMGVG 240 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 ++P+YSA+ LR G +V +LP Y Q M +YALYPSRQYLDAKI TWV+++ + + L Sbjct: 241 LIPIYSAISGLRKGELVWLLPEYTSQPMNLYALYPSRQYLDAKIRTWVEFLRDELPATLA 300 Query: 300 DDHQAL 305 D + L Sbjct: 301 ADQEEL 306 >D5NCU8.1 D5NCU8_9BURK Transcriptional regulator, LysR family Length = 312 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 196/306 (64%), Positives = 244/306 (79%), Gaps = 1/306 (0%) Query: 1 MDTLQNMRIFMRVVDAGSFTLAAQQMELTTAHVSRAVADLERHLRTRLLNRTTRRIALTE 60 MDTLQNMR+F+RVV+AGSFT AAQ + TTA+ SRAV+DLE HLRTRLLNRTTRRIALTE Sbjct: 1 MDTLQNMRVFVRVVEAGSFTGAAQHLNTTTAYASRAVSDLEAHLRTRLLNRTTRRIALTE 60 Query: 61 AGERYLLRCEQIVSYVQEAEAEASDAYVRPSGRLRIHTMTSFGQRYVIPAVSSYQKRYPD 120 AGERYL RCEQI++YV +AEAEA DA+ RPSG+L++H MTSFGQ YV+PA YQ+RYPD Sbjct: 61 AGERYLQRCEQILAYVDQAEAEAGDAHARPSGKLKVHAMTSFGQHYVVPAAGRYQERYPD 120 Query: 121 VAIELTLAQRIPDLLEEGFDVSLVLARELPDSGLIFRQLSSIYSILCASPLYLEKHGTPQ 180 V IELTLAQR+PDLL+EGFDVSL LA LPDSGL+ ++L S +SI CASP YLE HG PQ Sbjct: 121 VQIELTLAQRMPDLLDEGFDVSLTLATGLPDSGLVSQRLGSAFSIACASPAYLELHGVPQ 180 Query: 181 KPQELLNHNCLQLVSPVSPLDEWAMEGPDGREVVAIK-SNFHVNVAEAMLLSLKEGMGIG 239 P +L+ H CLQ+V+PV P D+W +GP+G E +A+ + F VNVAEAM +++ GMG+G Sbjct: 181 TPADLVRHTCLQMVTPVFPTDKWTFDGPNGEETIALGPTTFQVNVAEAMAVAVSSGMGVG 240 Query: 240 VLPLYSAVDALRAGTIVRVLPRYRMQDMGVYALYPSRQYLDAKISTWVDWMHESVDKALQ 299 ++P+YSA+ LR+G +V +LP Y Q M +YALYPSRQYLDAKI TWV+++ + + L Sbjct: 241 LIPIYSAISGLRSGELVWLLPEYTSQAMNLYALYPSRQYLDAKIRTWVEFLRDVLPATLA 300 Query: 300 DDHQAL 305 DH L Sbjct: 301 ADHAEL 306