BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0188.p         (96 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J0G5.1 D8J0G5_HERSS Transcription regulator protein                 119   1e-25
E5U107.1 E5U107_ALCXX Transcriptional regulator                        88   4e-16
F2LJM6.1 F2LJM6_BURGA GntR family regulatory protein                   86   2e-15
A9BQX9.1 A9BQX9_DELAS Transcriptional regulator, GntR family wit...    85   4e-15
B1K6G8.1 B1K6G8_BURCC Transcriptional regulator, GntR family wit...    81   4e-14

>D8J0G5.1 D8J0G5_HERSS Transcription regulator protein
          Length = 469

 Score =  119 bits (299), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 56/71 (78%), Positives = 61/71 (85%)

Query: 12 STLTQRLVQLIRRQISEGVYAPGSRLPSIRDMAKTHDCAKNTIVNAFDYLTALGVLEPRR 71
          +TLT  LVQLIRRQI+EGVYAPGSRLPSIR+MA  H CAKNTIVN FD LTALG+ EPRR
Sbjct: 6  TTLTSTLVQLIRRQIAEGVYAPGSRLPSIREMAARHGCAKNTIVNVFDELTALGLAEPRR 65

Query: 72 GSGFFVCAAAP 82
          G+GFFVC A P
Sbjct: 66 GAGFFVCVAPP 76


>E5U107.1 E5U107_ALCXX Transcriptional regulator
          Length = 476

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/72 (55%), Positives = 54/72 (75%)

Query: 14 LTQRLVQLIRRQISEGVYAPGSRLPSIRDMAKTHDCAKNTIVNAFDYLTALGVLEPRRGS 73
          + + L +LI RQI+EGVY PG +LPS+R++A+ H  AKNT+V AF+ L A G++EPRRGS
Sbjct: 16 IAESLARLIGRQIAEGVYRPGDKLPSLRELAQLHRYAKNTVVVAFEMLVARGLVEPRRGS 75

Query: 74 GFFVCAAAPAIR 85
          GF+V    PA R
Sbjct: 76 GFYVLDTGPARR 87


>F2LJM6.1 F2LJM6_BURGA GntR family regulatory protein
          Length = 470

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 51/67 (76%)

Query: 12 STLTQRLVQLIRRQISEGVYAPGSRLPSIRDMAKTHDCAKNTIVNAFDYLTALGVLEPRR 71
          +TL++ +   + RQI EG+   GS+LPSIR+ A    C+KNT+V+AFD LTA G++EPRR
Sbjct: 7  TTLSEGIADNLARQIEEGILPAGSKLPSIREYADASGCSKNTVVSAFDILTANGLIEPRR 66

Query: 72 GSGFFVC 78
          GSGFFVC
Sbjct: 67 GSGFFVC 73


>A9BQX9.1 A9BQX9_DELAS Transcriptional regulator, GntR family with
          aminotransferase domain
          Length = 468

 Score = 84.7 bits (208), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 35/68 (51%), Positives = 53/68 (77%)

Query: 14 LTQRLVQLIRRQISEGVYAPGSRLPSIRDMAKTHDCAKNTIVNAFDYLTALGVLEPRRGS 73
          + ++L  LI +QI++GVY PG +LPS+R++A+ H  AKNT+V+AFD L + G++EPRRGS
Sbjct: 11 IAEKLADLIGQQIADGVYRPGDKLPSLRELAQLHRYAKNTVVSAFDLLVSRGIVEPRRGS 70

Query: 74 GFFVCAAA 81
          GF+V  + 
Sbjct: 71 GFYVLGSG 78


>B1K6G8.1 B1K6G8_BURCC Transcriptional regulator, GntR family with
          aminotransferase domain
          Length = 461

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 56/78 (71%), Gaps = 3/78 (3%)

Query: 12 STLTQRLVQLIRRQISEGVYAPGSRLPSIRDMAKTHDCAKNTIVNAFDYLTALGVLEPRR 71
          ++L+  +   + RQI EGV A G++LPSIR+ AK   C+KNT+++AF+ L A G++EPRR
Sbjct: 7  ASLSGAMADNLARQIEEGVLAAGTKLPSIREYAKASGCSKNTVISAFEMLAADGLIEPRR 66

Query: 72 GSGFFV---CAAAPAIRQ 86
          GSGFFV    AAAP + +
Sbjct: 67 GSGFFVTRRAAAAPDLDE 84