BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0005.0182.p         (127 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A1VNM2.1 A1VNM2_POLNA Esterase, PHB depolymerase family                78   4e-13
A1TUD0.1 A1TUD0_ACIAC Esterase, PHB depolymerase family                69   2e-10
F2LQ79.1 F2LQ79_BURGA Polyhydroxybutyrate depolymerase domain pr...    68   4e-10
D5NJT5.1 D5NJT5_9BURK Esterase, PHB depolymerase family                67   7e-10
Q5P4K6.1 Q5P4K6_AROAE Poly(3-hydroxybutyrate) depolymerase             67   8e-10

>A1VNM2.1 A1VNM2_POLNA Esterase, PHB depolymerase family
          Length = 433

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/156 (35%), Positives = 74/156 (47%), Gaps = 37/156 (23%)

Query: 1   MFKKLNRMWLSSLKKAGKAHQKRASKALKA----IVSSPKAKRAPSGTASRKPVLPKSLP 56
           M K L  +WL +L++ GK  Q +  K  K+    +V +P AKRA +    R P+  K++ 
Sbjct: 33  MTKSLTSLWLKNLRRVGKVQQAQGRKLFKSLLTPVVRAPVAKRAKAAKTIR-PITLKNIK 91

Query: 57  RAAAP---------------------------GDWISSSCVTAGLPV---RRMHYRLFLP 86
              AP                           G W  S     G  +   RRM Y L+LP
Sbjct: 92  AVKAPASKAAKPRRKPAAAPAQPAASVLPLLPGSWKKSFFTLPGTGLASARRMLYWLYLP 151

Query: 87  SLAPGTAAPIPLIVMLHGCEQNADDFAAGTRMNQLA 122
           S+   +  P PL+VMLHGC+Q A DFAA TRMNQLA
Sbjct: 152 SVL--SREPRPLVVMLHGCKQTATDFAASTRMNQLA 185


>A1TUD0.1 A1TUD0_ACIAC Esterase, PHB depolymerase family
          Length = 387

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 77  RRMHYRLFLPSLAPGTAAPIPLIVMLHGCEQNADDFAAGTRMNQLA 122
           R + YRL+LP   PG  AP P++VMLHGC Q+A+DFAAGTRMN LA
Sbjct: 105 RALAYRLYLPPEVPGDGAPRPMVVMLHGCTQHAEDFAAGTRMNALA 150


>F2LQ79.1 F2LQ79_BURGA Polyhydroxybutyrate depolymerase domain protein
          Length = 361

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 68/130 (52%), Gaps = 16/130 (12%)

Query: 1   MFKKLNRMWLSSLKKAGKAHQKRASKALKAIVSSPKAKRAPSGTASRKPVLPKS---LPR 57
           M K L ++WL  +KK  +     A ++   + S+P++   P G  +R PV P+     PR
Sbjct: 1   MTKSLTKLWLGGMKKMLR---TPAPRSPAGVASAPRST--PRGADARAPVPPRESRVRPR 55

Query: 58  AAA--PGDWISSSC---VTAGLPVRRMHYRLFLPSLAPGTAAPIPLIVMLHGCEQNADDF 112
           AAA   G+W           G  VR + Y L++P   P  A    L+VMLHGC Q+AD F
Sbjct: 56  AAAWAGGEWSRGEHPLPFVIGRLVRHLGYALYVPRDLPEGAT---LVVMLHGCTQDADQF 112

Query: 113 AAGTRMNQLA 122
           A GTRMN LA
Sbjct: 113 AQGTRMNLLA 122


>D5NJT5.1 D5NJT5_9BURK Esterase, PHB depolymerase family
          Length = 388

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 39/55 (70%), Gaps = 2/55 (3%)

Query: 68  SCVTAGLPVRRMHYRLFLPSLAPGTAAPIPLIVMLHGCEQNADDFAAGTRMNQLA 122
           S  T G    +  Y+L++P  A  T  P+PLIVMLHGC QNADDFAAGTRMN++A
Sbjct: 113 STHTFGNSAGQRQYKLYVP--AAYTGEPLPLIVMLHGCTQNADDFAAGTRMNEMA 165


>Q5P4K6.1 Q5P4K6_AROAE Poly(3-hydroxybutyrate) depolymerase
          Length = 455

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 45/75 (60%), Gaps = 4/75 (5%)

Query: 48  KPVLPKSLPRAAAPGDWISSSCVTAGLPVRRMHYRLFLPSLAPGTAAPIPLIVMLHGCEQ 107
           +P++P + P     G    S   T     R   Y+L++PS   G   P+PL+VMLHGC Q
Sbjct: 132 EPIVPGAAPETVPDGARFISGSYTNAAGTR--CYKLYVPSNYGGE--PVPLVVMLHGCTQ 187

Query: 108 NADDFAAGTRMNQLA 122
           N DDFAAGTRMN+LA
Sbjct: 188 NPDDFAAGTRMNELA 202